| MMDBm0000012 | Agrobacterium tumefaciens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0394800 | Alistipes indistinctus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0805428 | Anaerotruncus colihominis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0392079 | Bacteroides caccae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392086 | Bacteroides cellulosilyticus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000039 | Bacteroides clarus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0395105 | Phocaeicola coprocola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0395106 | Phocaeicola coprophilus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392094 | Bacteroides eggerthii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392098 | Bacteroides faecis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392100 | Bacteroides finegoldii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392101 | Bacteroides fluxus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392196 | Bacteroides intestinalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392206 | Bacteroides oleiciplenus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392208 | Bacteroides ovatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392248 | Bacteroides xylanisolvens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392211 | Bacteroides ovatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0395117 | Phocaeicola plebeius | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392224 | Bacteroides salyersiae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392239 | Bacteroides uniformis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000058 | Bacteroides xylanisolvens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393007 | Barnesiella intestinihominis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000064 | Bifidobacterium adolescentis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648061 | Bifidobacterium catenulatum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648069 | Bifidobacterium coryneforme | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648074 | Bifidobacterium dentium | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000072 | Bifidobacterium catenulatum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0647984 | Bifidobacterium adolescentis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0802298 | Blautia hydrogenotrophica | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000094 | Blautia obeum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0665201 | Brachybacterium paraconglomeratum | Eubacteria | Actinobacteria | Aerobe, microaerophile |
| MMDBm0798353 | Butyricicoccus pullicaecorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002325 | Butyrivibrio fibrisolvens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001417 | Clostridium lentocellum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0685945 | Cellulosimicrobium cellulans | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0802145 | Ruminiclostridium cellobioparum | Eubacteria | Firmicutes | |
| MMDBm0802089 | Hungateiclostridium clariflavum | Eubacteria | Firmicutes | |
| MMDBm0806090 | Clostridium leptum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802611 | Coprococcus eutactus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0397638 | Dyadobacter beijingensis | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0001564 | Dyadobacter fermentans | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0000148 | Dysgonomonas gadei | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0000688 | Enterococcus saccharolyticus | Eubacteria | Firmicutes | |
| MMDBm0000176 | Eubacterium siraeum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806096 | Eubacterium siraeum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805488 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000180 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000181 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0792742 | Lactobacillus gastricus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0803001 | Marvinbryantia formatexigens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0670570 | Microbacterium paraoxydans | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000002 | Micromonospora aurantiaca | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000221 | Ochrobactrum anthropi | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000222 | Ochrobactrum intermedium | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0000228 | Paenibacillus daejeonensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0767930 | Paenibacillus graminis | Eubacteria | Firmicutes | |
| MMDBm0000232 | Parabacteroides distasonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000233 | Parabacteroides goldsteinii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393929 | Prevotella brevis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393934 | Prevotella buccae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000860 | Prevotella copri | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393977 | Prevotella loescheii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394000 | Prevotella oralis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000249 | Prevotella ruminicola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394030 | Prevotella salivae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394042 | Prevotella veroralis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0692554 | Acidipropionibacterium acidipropionici | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0803106 | Pseudobutyrivibrio ruminis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0580236 | Pseudomonas oleovorans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0801900 | Pseudoramibacter alactolyticus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0803246 | Roseburia intestinalis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0803247 | Roseburia inulinivorans | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002484 | Ruminococcus albus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001105 | Ruminococcus callidus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000263 | Ruminococcus champanellensis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805711 | Ruminococcus flavefaciens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805712 | Ruminococcus flavefaciens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000093 | Blautia obeum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0648739 | Scardovia inopinata | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0639412 | Schlesneria paludicola | Eubacteria | Planctomycetes | Facultative anaerobe |
| MMDBm0626640 | Silanimonas lenta | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002553 | Spirosoma linguale | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0626692 | Stenotrophomonas maltophilia | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0000277 | Streptococcus salivarius | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0806047 | Subdoligranulum variabile | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002641 | Sulfolobus solfataricus | Not Available | Crenarchaeota | Aerobe |
| MMDBm0646445 | Trueperella pyogenes | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000923 | Bacteroides nordii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0001040 | Bifidobacterium breve | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0392190 | Bacteroides graminisolvens | Eubacteria | Bacteroidetes | Anaerobe |