MiMeDB: Pseudomonas aeruginosa (MMDBm0000252)

Microbe Identification

Microbe name

Pseudomonas aeruginosa

NCBI Taxonomy ID

287

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Proteobacteria

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Species

aeruginosa

Microbe Properties

Gram staining properties

Positive

Shape

Bacilli

Mobility

Yes

Flagellar presence

Yes

Number of membranes

Oxygen preference

Aerobe

Optimal temperature

Temperature range

Mesophilic

Habitat

Multiple

Biotic relationship

Free living

Cell arrangement

Singles

Sporulation

Singles

Metabolism

Not Available

Energy source

Heterotroph

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human			Not Available	Human Oral Microbiome Database (HOMD)	20624719
Human	Lower respiratory tract		Not Available	BacDive	34718743
Human	Lower respiratory tract		Not Available	BacDive	34718743
Human	Leg		Not Available	BacDive	34718743
Human	Rectum		Not Available	BacDive	34718743
Human	Lower respiratory tract		Not Available	BacDive	34718743
Human	Skin		Not Available	BacDive	34718743
Human	Gallbladder		Not Available	BacDive	34718743
Human	Bronchi		Not Available	BacDive	34718743
Human	Large intestine		Not Available	BacDive	34718743
Human	Trachea		Not Available	BacDive	34718743
Human	Inner cheek		Not Available	BacDive	34718743
Human	Lung	Sputum	Not Available	Disbiome	25403149
Human	Gingiva	Subgingival plaque	Not Available	Disbiome	27717873
Human	Large intestine	Feces	Not Available	Disbiome	25784074
Human	Gingiva	Subgingival plaque	Not Available	Disbiome	27717873

Health Effects

Host	Related Health Condition	Microbal response/effect	Data Source	Reference
Human	Cystic fibrosis		BacDive
Human	Chronic obstructive pulmonary disease	Elevated	Disbiome	25403149
Human	Irritable bowel syndrome	Elevated	Disbiome	25784074

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0024422	Acetyl-CoA	Hydrogen Ion	Aminoglycoside N(3)-acetyltransferase IV	N-Acetylation	RHEA	34755880
MMDBr0024479	gentamicin C	Hydrogen Ion	Gentamicin 3-N-acetyltransferase	Acetylation	RHEA	34755880
MMDBr0024497	S-Adenosylmethionine	S-Adenosylhomocysteine	Type I restriction enzyme MjaVII methylase subunit	Methylation	RHEA	34755880
MMDBr0036118	N-eicosanoyl-sphing-4-enine	Arachidic acid	Neutral ceramidase	Hydrolysis	RHEA	34755880
MMDBr0036119	Ceramide (d18:1/18:0)	Octadecanoate (N-C18:0)	Neutral ceramidase	Hydrolysis	RHEA	34755880
MMDBr0036120	N-(hexanoyl)sphing-4-enine	Hexanoate (N-C6:0)	Neutral ceramidase	Hydrolysis	RHEA	34755880
MMDBr0036121	N-(9Z-octadecenoyl)-sphing-4-enine	(9Z)-octadecenoic acid	Neutral ceramidase	Hydrolysis	RHEA	34755880
MMDBr0036122	N-tetracosanoyl-sphing-4-enine	tetracosanoic acid	Neutral ceramidase	Hydrolysis	RHEA	34755880
MMDBr0036123	Cer(d18:1/16:0)	hexadecanoic acid	Neutral ceramidase	Hydrolysis	RHEA	34755880
MMDBr0024341	S-Adenosylmethionine	5'-Methylthioadenosine	Acyl-homoserine-lactone synthase	Synthesis	RHEA	34755880
MMDBr0024345	L-Tyrosine	Hydrogen Ion	Tyrosine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024346	NAD	Hydrogen Ion	Enoyl-[acyl-carrier-protein] reductase [NADH]	Reduction; Synthesis	RHEA	34755880
MMDBr0024349	Adenosine triphosphate	Hydrogen Ion	Diacylglycerol kinase	Phosphorylation	RHEA	34755880
MMDBr0024355	L-Tyrosine	Hydrogen Ion	Tyrosine-protein kinase ptk	Phosphorylation	RHEA	34755880
MMDBr0024360	L-Valine	diphosphate	Valine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024368	L-Isoleucine	diphosphate	Isoleucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024389	L-Leucine	diphosphate	Leucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024396	NAD	Niacinamide	Exotoxin A	Not Available	RHEA	34755880
MMDBr0024403	Hydrogen Ion	Carbon dioxide	3-oxoacyl-[acyl-carrier-protein] synthase 3	Synthesis	RHEA	34755880
MMDBr0024411	L-Serine	Hydrogen Ion	Type-2 serine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024415	(S)-4-Amino-5-oxopentanoate	Hydrogen Ion	Glutamyl-tRNA reductase	Reduction	RHEA	34755880
MMDBr0024418	L-Alanine	diphosphate	Alanine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024424	S-Adenosylmethionine	S-Adenosylhomocysteine	Protein-L-isoaspartate O-methyltransferase	Methylation	RHEA	34755880
MMDBr0024448	alpha-Ketoisovaleric acid	Carbon dioxide	2-oxoisovalerate dehydrogenase subunit alpha	Dehydrogenation	RHEA	34755880
MMDBr0024449	L-Methionine	diphosphate	Methionine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024451	Hydrogen carbonate	Hydrogen Ion	Propionyl-CoA carboxylase, biotin carboxylase and biotin-carboxyl carrier subunit	Carboxylation	RHEA	34755880
MMDBr0024459	Uridine triphosphate	diphosphate	Bifunctional uridylyltransferase/uridylyl-removing enzyme	Transfer of an uridylyl group	RHEA	34755880
MMDBr0024469	Geranyl diphosphate	diphosphate	tRNA 2-selenouridine synthase	Synthesis	RHEA	34755880
MMDBr0024470	Geranyl diphosphate	diphosphate	tRNA 2-selenouridine synthase	Synthesis	RHEA	34755880
MMDBr0024471	L-Methionine	L-Cysteine	Peptide methionine sulfoxide reductase MsrA	Reduction	RHEA	34755880
MMDBr0024473	Hydrogen Ion	NADP(+)	Quinone oxidoreductase 1	Redox reaction	RHEA	34755880
MMDBr0024474	L-Proline	diphosphate	Proline--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024477	Cytidine triphosphate	diphosphate	CCA-adding enzyme	Synthesis and repair of 3'-terminal CCA sequence of tRNA	RHEA	34755880
MMDBr0024483	L-Glutamine	L-Glutamic acid	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Amide group addition	RHEA	34755880
MMDBr0024485	Choline	CMP	Phosphatidylcholine synthase	Synthesis	RHEA	34755880
MMDBr0024493	NAD	Hydrogen Ion	Dihydrolipoyl dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024498	Succinyl-CoA	CoA	Multifunctional 2-oxoglutarate metabolism enzyme	Dehydrogenation	RHEA	34755880
MMDBr0024500	Glycerol 3-phosphate	CoA	Glycerol-3-phosphate acyltransferase	Acylation	RHEA	34755880
MMDBr0024515	Glycine	Hydrogen cyanide	Hydrogen cyanide synthase subunit HcnC	Synthesis	RHEA	34755880
MMDBr0024522	Glycine	diphosphate	Glycine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024527	Cytidine triphosphate	diphosphate	Phosphatidate cytidylyltransferase	Transfer of a cytidylyl group	RHEA	34755880
MMDBr0024533	L-Glutamine	Ammonium	Probable chemoreceptor glutamine deamidase CheD	Deamidation	RHEA	34755880
MMDBr0024535	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA large subunit methyltransferase F	Methylation	RHEA	34755880
MMDBr0024539	Tetra-mu3-sulfido-tetrairon(2+)	5'-Deoxyadenosine	Lipoyl synthase	Synthesis	RHEA	34755880
MMDBr0024548	(6S)-5,6,7,8-tetrahydrofolic acid	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	Probable aminomethyltransferase	Methylation	RHEA	34755880
MMDBr0024550	Acetyl-CoA	CoA	Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system	Dehydrogenation	RHEA	34755880
MMDBr0024559	Adenosine triphosphate	Hydrogen Ion	Histidine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024563	NADP(+)	Hydrogen Ion	3-oxoacyl-[acyl-carrier-protein] reductase MabA	Reduction; Synthesis	RHEA	34755880
MMDBr0024565	Choline	Betaine aldehyde	Oxygen-dependent choline dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024568	L-Glutamine	L-Glutamic acid	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Amide group addition	RHEA	34755880
MMDBr0024569	alpha-Ketoglutarate	L-Glutamic acid	Aromatic-amino-acid aminotransferase 1	Amine group addition	RHEA	34755880
MMDBr0024578	Adenosine triphosphate	diphosphate	Cysteine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024590	Adenosine triphosphate	ADP	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0024591	NAD	Hydrogen Ion	Trans-2-enoyl-CoA reductase [NADH]	Reduction	RHEA	34755880
MMDBr0024593	ADP-alpha-D-glucose	Hydrogen Ion	Probable glycogen synthase	Synthesis	RHEA	34755880
MMDBr0024597	L-Aspartic acid	diphosphate	Aspartate--tRNA(Asp/Asn) ligase	Ligation	RHEA	34755880
MMDBr0024602	L-Tyrosine	diphosphate	Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme	Synthesis	RHEA	34755880
MMDBr0024605	L-Cysteine	L-Cystine	Thiol:disulfide interchange protein DsbD	Transfer of electrons from cytoplasmic thioredoxin to the periplasm	RHEA	34755880
MMDBr0024606	L-Cysteine	L-Cystine	Thiol:disulfide interchange protein DsbD	Transfer of electrons from cytoplasmic thioredoxin to the periplasm	RHEA	34755880
MMDBr0024608	Isobutyryl-CoA	CoA	Dihydrolipoyllysine-residue acyltransferase component of branched-chain alpha-ketoacid dehydrogenase complex	Dehydrogenation	RHEA	34755880
MMDBr0024612	Glycerol 3-phosphate	Dihydroxyacetone phosphate	Probable anaerobic glycerol-3-phosphate dehydrogenase subunit B	Dehydrogenation	RHEA	34755880
MMDBr0024616	NAD	Niacinamide	Type VI secretion system spike protein VgrG1	Transfer of a ribosyl group	RHEA	34755880
MMDBr0024619	Pyruvic acid	Carbon dioxide	Pyruvate dehydrogenase E1 component	Dehydrogenation	RHEA	34755880
MMDBr0024625	NAD	3-dehydrocarnitine	L-carnitine dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024628	L-Phenylalanine	Hydrogen Ion	Phenylalanine--tRNA ligase beta subunit	Ligation	RHEA	34755880
MMDBr0024629	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC	Synthesis	RHEA	34755880
MMDBr0024630	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase A	Methylation	RHEA	34755880
MMDBr0024636	Phosphate	Ribose-1-phosphate	Probable 6-oxopurine nucleoside phosphorylase	Phosphorylation	RHEA	34755880
MMDBr0024644	L-Cystine	L-Cysteine	Peptide methionine sulfoxide reductase MsrA	Reduction	RHEA	34755880
MMDBr0024649	L-Glutamine	diphosphate	Glutamine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024656	L-Arginine	diphosphate	Arginine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024666	L-Lysine	diphosphate	Lysine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024688	Acetyl-CoA	CoA	3-ketoacyl-CoA thiolase	Carbon‚Äìcarbon-bond formation	RHEA	34755880
MMDBr0024692	L-Cysteine	Hydrogen sulfide	3-mercaptopyruvate sulfurtransferase	Sulfuration	RHEA	34755880
MMDBr0024700	L-Cystine	L-Cysteine	Adenosine 5'-phosphosulfate reductase	Reduction	RHEA	34755880
MMDBr0024705	Molybdate	Molybdate	Molybdenum import ATP-binding protein ModC	Transport	RHEA	34755880
MMDBr0024706	Water	Hydroxylamine	Hydroxylamine reductase	Reduction	RHEA	34755880
MMDBr0024707	di-mu-Sulfido-diiron(1+)	5'-Deoxyadenosine	Biotin synthase	Synthesis	RHEA	34755880
MMDBr0024716	NAD	Hydrogen Ion	Fatty acid oxidation complex subunit alpha	Dehydrogenation	RHEA	34755880
MMDBr0024721	Selenophosphate	Phosphate	L-seryl-tRNA(Sec) selenium transferase	Transfer of L-seryl-tRNA(Sec) selenium	RHEA	34755880
MMDBr0024731	FMNH2	Flavin mononucleotide	Alkanesulfonate monooxygenase	Oxygenation	RHEA	34755880
MMDBr0024745	L-Glutamic acid	diphosphate	Glutamate--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024747	NADP(+)	Uridine 5'-monophosphate	Probable tRNA-dihydrouridine synthase	Synthesis	RHEA	34755880
MMDBr0024750	Guanosine triphosphate	formate	GTP cyclohydrolase-2	Hydrolysis of bond; Synthesis	RHEA	34755880
MMDBr0024751	lipid II(3−)	di-trans,octa-cis-undecaprenyl diphosphate	Penicillin-binding protein 2a	Glycan chain elongation	RHEA	34755880
MMDBr0024759	Adenosine triphosphate	diphosphate	RNA 3'-terminal phosphate cyclase	Cycle formation	RHEA	34755880
MMDBr0024761	FADH2	Hydrogen Ion	Electron transfer flavoprotein-ubiquinone oxidoreductase	Redox reaction	RHEA	34755880
MMDBr0024763	L-Tryptophan	Hydrogen Ion	Tryptophan--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024765	7-Aminomethyl-7-carbaguanine	Guanine	Putative queuine tRNA-ribosyltransferase	Transfer of a ribosyl group	RHEA	34755880
MMDBr0024766	S-Adenosylmethionine	S-Adenosylhomocysteine	23S rRNA (guanosine-2'-O-)-methyltransferase RlmB	Methylation	RHEA	34755880
MMDBr0024768	L-Methionine	L-Cysteine	Peptide methionine sulfoxide reductase MsrB	Reduction	RHEA	34755880
MMDBr0024770	di-mu-Sulfido-diiron(1+)	L-Cysteine	Probable tRNA sulfurtransferase	Sulfuration	RHEA	34755880
MMDBr0024774	Glycine	Carbon dioxide	Probable glycine dehydrogenase (decarboxylating) subunit 1	Dehydrogenation	RHEA	34755880
MMDBr0024778	(6S)-10-formyltetrahydrofolic acid	(6S)-5,6,7,8-tetrahydrofolic acid	Methionyl-tRNA formyltransferase	Transfer of a formyl group	RHEA	34755880
MMDBr0024779	N-Formyl-L-methionine	formate	Peptide deformylase 1	Removal of the N-terminal formyl group	RHEA	34755880
MMDBr0024781	S-Adenosylmethionine	S-Adenosylhomocysteine	Chemotaxis protein methyltransferase	Methylation	RHEA	34755880
MMDBr0024782	di-mu-Sulfido-diiron(2+)	di-mu-Sulfido-diiron(1+)	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	Reduction	RHEA	34755880
MMDBr0024787	L-Threonine	Hydrogen Ion	Threonine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024789	di-mu-Sulfido-diiron(2+)	di-mu-Sulfido-diiron(1+)	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	Reduction	RHEA	34755880
MMDBr0024808	1-Deoxy-D-xylulose 5-phosphate	2-[(2R,5Z)-2-Carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate	Thiazole synthase	Synthesis	RHEA	34755880
MMDBr0024809	Cyclic pyranopterin monophosphate	Molybdopterin	Molybdopterin synthase catalytic subunit	Synthesis	RHEA	34755880
MMDBr0024813	Dimethylallylpyrophosphate	diphosphate	tRNA dimethylallyltransferase	Transfer of a dimethylallyl group	RHEA	34755880
MMDBr0024825	Hydrogen Ion	ADP-D-glycero-beta-D-manno-heptose	Bifunctional protein HldE	Phosphorylation	RHEA	34755880
MMDBr0024834	S-Adenosylmethionine	S-Adenosylhomocysteine	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	Methylation	RHEA	34755880
MMDBr0024839	D-glycero-beta-D-manno-heptose 1,7-bisphosphate	Phosphate	D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase	Dephosphorylation	RHEA	34755880
MMDBr0024851	L-Dihydroorotic acid	orotate	Dihydroorotate dehydrogenase (quinone)	Dehydrogenation	RHEA	34755880
MMDBr0024875	S-Adenosylmethionine	S-Adenosylhomocysteine	Ubiquinone biosynthesis O-methyltransferase	Methylation	RHEA	34755880
MMDBr0024883	S-Adenosylmethionine	Adenine	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	Isomerization	RHEA	34755880
MMDBr0024892	Trehalose	D-Glucose	Trehalase 1	Hydrolysis	RHEA	34755880
MMDBr0024925	Glycerol 3-phosphate	Phosphate	Glycerol-3-phosphate acyltransferase	Acylation	RHEA	34755880
MMDBr0024967	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (guanine(37)-N1)-methyltransferase Trm5b	Methylation	RHEA	34755880
MMDBr0024971	L-Threonylcarbamoyladenylate	Hydrogen Ion	tRNA N6-adenosine threonylcarbamoyltransferase	Synthesis	RHEA	34755880
MMDBr0024974	S-Adenosylmethionine	5'-Deoxyadenosine	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	Synthesis	RHEA	34755880
MMDBr0024977	S-Adenosylmethionine	5'-Deoxyadenosine	Ribosomal protein S12 methylthiotransferase RimO	Methylthiolation	RHEA	34755880
MMDBr0025050	L-Alanine	(S)-8-amino-7-oxononanoic acid	Putative 8-amino-7-oxononanoate synthase	Ligation; Synthesis	RHEA	34755880
MMDBr0025060	L-Serine	Hydrogen Ion	Type-2 serine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0025066	S-Adenosylmethionine	S-Adenosylhomocysteine	Demethylmenaquinone methyltransferase	Methylation	RHEA	34755880
MMDBr0025067	L-Serine	diphosphate	Phosphoribosyl-dephospho-CoA transferase	Transfer of phosphoribosyl-dephospho-CoA	RHEA	34755880
MMDBr0025070	alpha-maltose 1-phosphate	Phosphate	Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase	Transfer of an alpha-1,4-glucan:maltose-1-phosphate maltosyl group	RHEA	34755880
MMDBr0025071	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (guanine-N(7)-)-methyltransferase	Methylation	RHEA	34755880
MMDBr0025072	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (uracil(54)-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025073	Selenophosphate	(2E)-thiogeraniol	tRNA 2-selenouridine synthase	Synthesis	RHEA	34755880
MMDBr0025074	Selenophosphate	(2E)-thiogeraniol	tRNA 2-selenouridine synthase	Synthesis	RHEA	34755880
MMDBr0025075	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA large subunit methyltransferase E	Methylation	RHEA	34755880
MMDBr0025078	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase G	Methylation	RHEA	34755880
MMDBr0025079	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase C	Methylation	RHEA	34755880
MMDBr0025081	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA large subunit methyltransferase K/L	Methylation	RHEA	34755880
MMDBr0025082	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA large subunit methyltransferase G	Methylation	RHEA	34755880
MMDBr0025084	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase B	Methylation	RHEA	34755880
MMDBr0025085	S-Adenosylmethionine	S-Adenosylhomocysteine	Putative ribosomal RNA large subunit methyltransferase H	Methylation	RHEA	34755880
MMDBr0025092	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA large subunit methyltransferase M	Methylation	RHEA	34755880
MMDBr0025097	L-Glutamine	S-Adenosylhomocysteine	Release factor glutamine methyltransferase	Methylation	RHEA	34755880
MMDBr0025100	S-Adenosylmethionine	S-Adenosylhomocysteine	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	Methylation	RHEA	34755880
MMDBr0025102	di-mu-Sulfido-diiron(1+)	5'-Deoxyadenosine	Ribosomal RNA large subunit methyltransferase N	Methylation	RHEA	34755880
MMDBr0025104	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase I	Methylation	RHEA	34755880
MMDBr0025105	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase H	Methylation	RHEA	34755880
MMDBr0025144	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase J	Methylation	RHEA	34755880
MMDBr0025145	di-mu-Sulfido-diiron(1+)	5'-Deoxyadenosine	Probable dual-specificity RNA methyltransferase RlmN	Methylation	RHEA	34755880
MMDBr0025149	L-Serine	Hydrogen Ion	Isocitrate dehydrogenase kinase/phosphatase	Dehydrogenation; Phosphorylation	RHEA	34755880
MMDBr0025150	D-Arginine	2-Oxoarginine	FAD-dependent catabolic D-arginine dehydrogenase DauA	Dehydrogenation	RHEA	34755880
MMDBr0025152	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA/tmRNA (uracil-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025154	Water	Niacinamide	NAD-dependent protein deacetylase	Deacetylation	RHEA	34755880
MMDBr0025165	Phosphate	L-Tyrosine	Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme	Synthesis	RHEA	34755880
MMDBr0025167	L-Lysine	Hydrogen Ion	tRNA(Ile)-lysidine synthase	Synthesis	RHEA	34755880
MMDBr0025168	Acetyl-CoA	Hydrogen Ion	Putative [ribosomal protein S5]-alanine N-acetyltransferase	Acetylation	RHEA	34755880
MMDBr0025171	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA large subunit methyltransferase K/L	Methylation	RHEA	34755880
MMDBr0025190	S-Adenosylmethionine	S-Adenosylhomocysteine	Ubiquinone biosynthesis O-methyltransferase	Methylation	RHEA	34755880
MMDBr0025193	Adenosine triphosphate	ADP	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0025196	L-Glutamine	S-Adenosylhomocysteine	50S ribosomal protein L3 glutamine methyltransferase	Methylation	RHEA	34755880
MMDBr0025205	L-Lactic acid	Pyruvic acid	L-lactate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0025214	(S)-malate(2-)	Oxalacetic acid	Probable malate:quinone oxidoreductase	Redox reaction	RHEA	34755880
MMDBr0025215	ADP	Hydrogen Ion	Putative phosphoenolpyruvate synthase regulatory protein	Synthesis	RHEA	34755880
MMDBr0025216	Hydrogen Ion	NAD	NAD(P)H dehydrogenase (quinone)	Dehydrogenation; Redox reaction; Reduction	RHEA	34755880
MMDBr0025217	Hydrogen Ion	NADP(+)	NAD(P)H dehydrogenase (quinone)	Dehydrogenation; Redox reaction; Reduction	RHEA	34755880
MMDBr0025251	GDP-alpha-D-mannuronate	Guanosine diphosphate	Mannuronan synthase	Synthesis	RHEA	34755880
MMDBr0025258	Uridine 5'-monophosphate	L-Cysteine	tRNA-specific 2-thiouridylase MnmA	2-Thiolation of uridine	RHEA	34755880
MMDBr0025270	Methionine sulfone	N-acetyl-L-methionine sulfone	L-methionine sulfoximine/L-methionine sulfone acetyltransferase	Acylation	RHEA	34755880
MMDBr0025271	L-Methionine sulfoximine	N-acetyl-L-methionine sulfoximine	L-methionine sulfoximine/L-methionine sulfone acetyltransferase	Acylation	RHEA	34755880
MMDBr0025273	Water	Niacinamide	NAD-dependent protein deacylase	Deacylation	RHEA	34755880
MMDBr0025280	Hydrogen Ion	Sodium	Na(+)-translocating NADH-quinone reductase subunit D	Reduction	RHEA	34755880
MMDBr0025300	Hydrogen Ion	diphosphate	Putative phosphoenolpyruvate synthase regulatory protein	Synthesis	RHEA	34755880
MMDBr0025326	Guanosine triphosphate	5'-Deoxyadenosine	Probable GTP 3',8-cyclase	Cycle formation	RHEA	34755880
MMDBr0025373	Iron(3+)	Hydrogen Ion	Quinoprotein ethanol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0025374	Iron(3+)	Hydrogen Ion	Quinoprotein ethanol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0025389	L-Methionine	Methionine sulfoxide	Protein-methionine-sulfoxide reductase catalytic subunit MsrP	Reduction	RHEA	34755880
MMDBr0025411	heme b	Carbon monoxide	Heme oxygenase PigA	Oxygenation	RHEA	34755880
MMDBr0025412	heme b	Carbon monoxide	Heme oxygenase PigA	Oxygenation	RHEA	34755880
MMDBr0025432	carboxy-S-adenosyl-L-methionine	S-Adenosylhomocysteine	tRNA U34 carboxymethyltransferase	Methylation	RHEA	34755880
MMDBr0025440	NADP(+)	Uridine 5'-monophosphate	tRNA-dihydrouridine(20/20a) synthase	Synthesis	RHEA	34755880
MMDBr0025442	NAD	Uridine 5'-monophosphate	tRNA-dihydrouridine(20/20a) synthase	Synthesis	RHEA	34755880
MMDBr0025444	NADP(+)	Uridine 5'-monophosphate	tRNA-dihydrouridine(20/20a) synthase	Synthesis	RHEA	34755880
MMDBr0025446	NAD	Uridine 5'-monophosphate	tRNA-dihydrouridine(20/20a) synthase	Synthesis	RHEA	34755880
MMDBr0025460	NADP(+)	Uridine 5'-monophosphate	tRNA-dihydrouridine(16) synthase	Synthesis	RHEA	34755880
MMDBr0025462	NAD	Uridine 5'-monophosphate	tRNA-dihydrouridine(16) synthase	Synthesis	RHEA	34755880
MMDBr0025490	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal protein L11 methyltransferase	Methylation	RHEA	34755880
MMDBr0025493	L-Tyrosine	diphosphate	Protein adenylyltransferase MntA	Reversible transfer of an adenylyl group	RHEA	34755880
MMDBr0025494	L-Tyrosine	diphosphate	Protein adenylyltransferase SelO	Reversible transfer of an adenylyl group	RHEA	34755880
MMDBr0025495	L-Threonine	diphosphate	Protein adenylyltransferase SelO	Reversible transfer of an adenylyl group	RHEA	34755880
MMDBr0025496	L-Threonine	diphosphate	Protein adenylyltransferase SelO	Reversible transfer of an adenylyl group	RHEA	34755880
MMDBr0025505	NAD	Uridine 5'-monophosphate	Probable tRNA-dihydrouridine synthase	Synthesis	RHEA	34755880
MMDBr0025514	Acetyl-CoA	Malonyl-CoA	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Carboxylation	RHEA	34755880
MMDBr0025522	L-Glutamine	Ammonium	Protein-glutamine gamma-glutamyltransferase	Cross-linking of proteins and the conjugation of polyamines to proteins	RHEA	34755880
MMDBr0025615	dihydro-heme d1	heme d1	Dihydro-heme d1 dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0025616	dihydro-heme d1	heme d1	Dihydro-heme d1 dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0025620	L-Cysteine	Sn-Glycerol-1-phosphate	Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase	Transfer of the diacylglyceryl group	RHEA	34755880
MMDBr0025630	S-Adenosylmethionine	5'-Deoxyadenosine	PqqA peptide cyclase	Cycle formation	RHEA	34755880
MMDBr0025638	Adenosine triphosphate	L-Cysteine	tRNA-cytidine(32) 2-sulfurtransferase	Sulfuration	RHEA	34755880
MMDBr0025639	Adenosine triphosphate	L-Cysteine	tRNA-cytidine(32) 2-sulfurtransferase	Sulfuration	RHEA	34755880
MMDBr0025650	Hydrogen Ion	Hydrogen Ion	NADH-quinone oxidoreductase subunit C/D	Redox reaction	RHEA	34755880
MMDBr0025654	L-Serine	diphosphate	Protein adenylyltransferase SelO	Reversible transfer of an adenylyl group	RHEA	34755880
MMDBr0025655	L-Serine	diphosphate	Protein adenylyltransferase SelO	Reversible transfer of an adenylyl group	RHEA	34755880
MMDBr0025716	Selenophosphate	(2E)-thiogeraniol	tRNA 2-selenouridine synthase	Synthesis	RHEA	34755880
MMDBr0025717	Selenophosphate	(2E)-thiogeraniol	tRNA 2-selenouridine synthase	Synthesis	RHEA	34755880
MMDBr0025746	salicylate	diphosphate	Pyochelin synthase PchD	Synthesis	RHEA	34755880
MMDBr0025747	salicylate	diphosphate	Pyochelin synthase PchD	Synthesis	RHEA	34755880
MMDBr0025749	Adenosine triphosphate	diphosphate	Pyochelin synthase PchE	Synthesis	RHEA	34755880
MMDBr0025750	Adenosine triphosphate	diphosphate	Pyochelin synthase PchE	Synthesis	RHEA	34755880
MMDBr0025759	L-Alanine	diphosphate	Phosphinothricin tripeptide synthase PhsC	Synthesis	RHEA	34755880
MMDBr0025760	L-Alanine	diphosphate	Phosphinothricin tripeptide synthase PhsC	Synthesis	RHEA	34755880
MMDBr0025780	L-Glutamic acid	diphosphate	AMB antimetabolite synthase AmbE	Synthesis	RHEA	34755880
MMDBr0025781	L-Glutamic acid	diphosphate	AMB antimetabolite synthase AmbE	Synthesis	RHEA	34755880
MMDBr0025786	L-Cysteine	L-Cystine	Peroxiredoxin	Oxidation	RHEA	34755880
MMDBr0025921	Hydrogen Ion	NAD	FMN-dependent NADH:quinone oxidoreductase	Redox reaction	RHEA	34755880
MMDBr0025922	Hydrogen Ion	NAD	FMN-dependent NADH:quinone oxidoreductase	Redox reaction	RHEA	34755880
MMDBr0025926	Guanosine diphosphate mannose	Guanosine diphosphate	D-rhamnosyltransferase WbpZ	Transfer of a rhamnosyl group	RHEA	34755880
MMDBr0025939	dTDP-beta-L-rhamnose	dTDP	Protein-arginine rhamnosyltransferase	Transfer of a rhamnosyl group	RHEA	34755880
MMDBr0025940	dTDP-beta-L-rhamnose	dTDP	Protein-arginine rhamnosyltransferase	Transfer of a rhamnosyl group	RHEA	34755880
MMDBr0026014	Phosphate	Uridine 5'-diphosphate	Ribonuclease PH	RNA degradation	RHEA	34755880
MMDBr0026015	Phosphate	Uridine 5'-diphosphate	Ribonuclease PH	RNA degradation	RHEA	34755880
MMDBr0026016	Phosphate	Guanosine 3',5'-bis(diphosphate)	Ribonuclease PH	RNA degradation	RHEA	34755880
MMDBr0026017	Phosphate	Adenosine diphosphate	Ribonuclease PH	RNA degradation	RHEA	34755880
MMDBr0026022	Adenosine monophosphate	Adenosine	5'-nucleotidase SurE	Hydrolysis of nucleotide; Dephosphorylation	RHEA	34755880
MMDBr0026023	Cytidine monophosphate	Adenosine	5'-nucleotidase SurE	Hydrolysis of nucleotide; Dephosphorylation	RHEA	34755880
MMDBr0026024	Uridine 5'-monophosphate	Uridine	5'-nucleotidase SurE	Hydrolysis of nucleotide; Dephosphorylation	RHEA	34755880
MMDBr0026025	Guanosine monophosphate	Guanosine	5'-nucleotidase SurE	Hydrolysis of nucleotide; Dephosphorylation	RHEA	34755880
MMDBr0026046	Uridine 5'-diphosphate	Uridine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026047	Uridine 5'-diphosphate	Cytidine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026048	Guanosine 3',5'-bis(diphosphate)	Guanosine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026085	Deoxyuridine-5'-diphosphate	Deoxyuridine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026086	2'-Deoxycytidine 5'-diphosphate	Deoxycytidine 5'-triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026087	2'-Deoxyadenosine 5'-diphosphate	Deoxyadenosine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026088	2'-Deoxyguanosine 5'-diphosphate	2'-Deoxyguanosine 5'-triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0024733	Water	Hydrogen Ion	Di/tripeptide transport ATP-binding protein DppD	Transport	RHEA	34755880
MMDBr0025106	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (cytidine-2'-O-)-methyltransferase TrmJ	Methylation	RHEA	34755880
MMDBr0025107	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ	Methylation	RHEA	34755880
MMDBr0025631	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ	Methylation	RHEA	34755880
MMDBr0025788	Hydrogen Ion	Water	Alkyl hydroperoxide reductase C	Reduction	RHEA	34755880
MMDBr0024552	S-Adenosylmethionine	S-Adenosylhomocysteine	Malonyl-[acyl-carrier protein] O-methyltransferase	Methylation	RHEA	34755880

Genome Data

Genome Link

MMDBm0000252

Genome Length

6353896 bp

# Predicted Proteins

5878

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-28 03:47:49 UTC

Reference

PMID: 17704766

Source Links

GenBank

NC_002516

MiMeDB ID	Organism	Strain	Serotype	Variant	NCBI Taxonomy	BaSyS2 Genome
MMDBm0002391	Pseudomonas aeruginosa PAO1	PAO1	-	-	208964	View
MMDBm0002399	Pseudomonas aeruginosa UCBPP-PA14	UCBPP-PA14	-	-	208963	View
MMDBm0002404	Pseudomonas aeruginosa PA7	PA7	-	-	381754	View
MMDBm0002407	Pseudomonas aeruginosa LESB58	LESB58	-	-	557722	View
MMDBm0580104	Pseudomonas aeruginosa NCGM2.S1	S1	-	-	1089456	View
MMDBm0580112	Pseudomonas aeruginosa PA103	PA103	-	-	1081927	View
MMDBm0580208	Pseudomonas alcaligenes	-	-	-	43263	View
MMDBm0580210	Pseudomonas alcaligenes NBRC 14159	NBRC 14159	-	-	1215092	View
MMDBm0881874	Pseudomonas aeruginosa ATCC 7700	ATCC 7700	-	-	https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=&lvl=3&lin=f&keep=1&srchmode=5&unlock	View