MiMeDB: Showing metabocard for Uridine 5'-monophosphate (MMDBc0029491)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-17 23:24:27 UTC

Update Date

2024-10-13 13:34:16 UTC

Metabolite ID

MMDBc0029491

Metabolite Identification

Common Name

Uridine 5'-monophosphate

Description

5'-Uridylic acid is a uracil nucleotide containing one phosphate group esterified to the sugar moiety in the 5' position.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0000288
     RDKit          3D
Uridine 5'-monophosphate
 34 35  0  0  0  0  0  0  0  0999 V2000
   -5.6395    1.2168    2.2041 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5807    0.8203    1.6331 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5200    0.2808    2.3372 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3954   -0.1327    1.6631 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2658   -0.0394    0.3224 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0707   -0.4919   -0.2747 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0902   -0.1876    0.4727 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0299   -0.8747   -0.2979 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4367   -0.6347    0.1784 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7945    0.7008    0.1314 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3658    0.9238    0.6693 P   0  0  0  0  0  5  0  0  0  0  0  0
    4.3675    0.7915    2.1793 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4183   -0.2483    0.0245 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9565    2.4327    0.1824 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7806   -0.2739   -1.6689 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1253   -1.1334   -2.6980 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7177   -0.0042   -1.6175 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3130   -0.8393   -2.5757 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3200    0.4898   -0.3146 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2656    0.6045   -1.5543 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4405    0.9081    0.3005 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6239    0.2047    3.4235 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5917   -0.5479    2.2542 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0890   -1.6043   -0.3147 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8162   -1.9454   -0.3580 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4870   -0.9482    1.2410 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1347   -1.2785   -0.3908 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0509   -0.5306    0.7474 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4127    3.1214    0.6294 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3775    0.6384   -1.7445 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7328   -2.0462   -2.5710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8513    1.0532   -1.8224 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4555   -1.7406   -2.1481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2370    1.3149   -0.2428 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 11 14  1  0
  8 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
  5 19  1  0
 19 20  2  0
 19 21  1  0
 21  2  1  0
 17  6  1  0
  3 22  1  0
  4 23  1  0
  6 24  1  6
  8 25  1  6
  9 26  1  0
  9 27  1  0
 13 28  1  0
 14 29  1  0
 15 30  1  6
 16 31  1  0
 17 32  1  6
 18 33  1  0
 21 34  1  0
M  END


  Mrv1652309032023592D          

 21 22  0  0  1  0            999 V2000
    0.4950    0.1203    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2822    0.3781    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1478    0.5912    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2509   -0.6875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9009   -0.1719    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4540    1.1860    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8215    0.0997    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5741   -0.6875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7356   -1.3509    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6915    0.0894    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7393   -0.9762    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2344    1.4471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6052    0.3541    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0622   -1.3475    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8600    0.8972    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1897   -0.2200    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6437    1.1550    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0112   -0.2200    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0181   -1.0415    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8362   -0.2200    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0181    0.6015    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  1  0  0  0
  1  3  1  0  0  0  0
  1  4  1  0  0  0  0
  2  5  1  0  0  0  0
  2  6  1  0  0  0  0
  3  7  1  0  0  0  0
  4  8  1  0  0  0  0
  4  9  1  6  0  0  0
  5 10  1  0  0  0  0
  5 11  2  0  0  0  0
  6 12  2  0  0  0  0
  7 13  1  1  0  0  0
  8 14  1  6  0  0  0
 10 15  1  0  0  0  0
 13 16  1  0  0  0  0
 15 17  2  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 18 21  2  0  0  0  0
  7  8  1  0  0  0  0
 12 15  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0029491

> <DATABASE_NAME>
MIME

> <SMILES>
O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COP(O)(O)=O)N1C=CC(=O)NC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C9H13N2O9P/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1

> <INCHI_KEY>
DJJCXFVJDGTHFX-XVFCMESISA-N

> <FORMULA>
C9H13N2O9P

> <MOLECULAR_WEIGHT>
324.1813

> <EXACT_MASS>
324.035866536

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
26.295980635705423

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3S,4R,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}phosphonic acid

> <ALOGPS_LOGP>
-1.76

> <JCHEM_LOGP>
-2.538808173

> <ALOGPS_LOGS>
-1.43

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
6.251166930280792

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.2255024716430984

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6645431498421583

> <JCHEM_POLAR_SURFACE_AREA>
165.85999999999999

> <JCHEM_REFRACTIVITY>
63.4385

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.20e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
uridine monophosphate

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0000288
     RDKit          3D
Uridine 5'-monophosphate
 34 35  0  0  0  0  0  0  0  0999 V2000
   -5.6395    1.2168    2.2041 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5807    0.8203    1.6331 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5200    0.2808    2.3372 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3954   -0.1327    1.6631 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2658   -0.0394    0.3224 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0707   -0.4919   -0.2747 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0902   -0.1876    0.4727 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0299   -0.8747   -0.2979 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4367   -0.6347    0.1784 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7945    0.7008    0.1314 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3658    0.9238    0.6693 P   0  0  0  0  0  5  0  0  0  0  0  0
    4.3675    0.7915    2.1793 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4183   -0.2483    0.0245 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9565    2.4327    0.1824 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7806   -0.2739   -1.6689 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1253   -1.1334   -2.6980 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7177   -0.0042   -1.6175 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3130   -0.8393   -2.5757 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3200    0.4898   -0.3146 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2656    0.6045   -1.5543 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4405    0.9081    0.3005 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6239    0.2047    3.4235 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5917   -0.5479    2.2542 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0890   -1.6043   -0.3147 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8162   -1.9454   -0.3580 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4870   -0.9482    1.2410 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1347   -1.2785   -0.3908 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0509   -0.5306    0.7474 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4127    3.1214    0.6294 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3775    0.6384   -1.7445 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7328   -2.0462   -2.5710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8513    1.0532   -1.8224 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4555   -1.7406   -2.1481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2370    1.3149   -0.2428 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 11 14  1  0
  8 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
  5 19  1  0
 19 20  2  0
 19 21  1  0
 21  2  1  0
 17  6  1  0
  3 22  1  0
  4 23  1  0
  6 24  1  6
  8 25  1  6
  9 26  1  0
  9 27  1  0
 13 28  1  0
 14 29  1  0
 15 30  1  6
 16 31  1  0
 17 32  1  6
 18 33  1  0
 21 34  1  0
M  END

HEADER    PROTEIN                                 03-SEP-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-20         0                                  
HETATM    1  C   UNK     0       0.924   0.225   0.000  0.00  0.00           C+0
HETATM    2  N   UNK     0       2.393   0.706   0.000  0.00  0.00           N+0
HETATM    3  O   UNK     0      -0.276   1.104   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       0.468  -1.283   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.548  -0.321   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.714   2.214   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.533   0.186   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.072  -1.283   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       1.373  -2.522   0.000  0.00  0.00           O+0
HETATM   10  N   UNK     0       5.024   0.167   0.000  0.00  0.00           N+0
HETATM   11  O   UNK     0       3.247  -1.822   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       4.171   2.701   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.996   0.661   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.983  -2.515   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       5.339   1.675   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -4.087  -0.411   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       6.802   2.156   0.000  0.00  0.00           O+0
HETATM   18  P   UNK     0      -5.621  -0.411   0.000  0.00  0.00           P+0
HETATM   19  O   UNK     0      -5.634  -1.944   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      -7.161  -0.411   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0      -5.634   1.123   0.000  0.00  0.00           O+0
CONECT    1    2    3    4                                                  
CONECT    2    1    5    6                                                  
CONECT    3    1    7                                                       
CONECT    4    1    8    9                                                  
CONECT    5    2   10   11                                                  
CONECT    6    2   12                                                       
CONECT    7    3   13    8                                                  
CONECT    8    4   14    7                                                  
CONECT    9    4                                                            
CONECT   10    5   15                                                       
CONECT   11    5                                                            
CONECT   12    6   15                                                       
CONECT   13    7   16                                                       
CONECT   14    8                                                            
CONECT   15   10   17   12                                                  
CONECT   16   13   18                                                       
CONECT   17   15                                                            
CONECT   18   16   19   20   21                                             
CONECT   19   18                                                            
CONECT   20   18                                                            
CONECT   21   18                                                            
MASTER        0    0    0    0    0    0    0    0   21    0   44    0
END

COMPND    HMDB0000288
HETATM    1  O1  UNL     1      -5.640   1.217   2.204  1.00  0.00           O  
HETATM    2  C1  UNL     1      -4.581   0.820   1.633  1.00  0.00           C  
HETATM    3  C2  UNL     1      -3.520   0.281   2.337  1.00  0.00           C  
HETATM    4  C3  UNL     1      -2.395  -0.133   1.663  1.00  0.00           C  
HETATM    5  N1  UNL     1      -2.266  -0.039   0.322  1.00  0.00           N  
HETATM    6  C4  UNL     1      -1.071  -0.492  -0.275  1.00  0.00           C  
HETATM    7  O2  UNL     1       0.090  -0.188   0.473  1.00  0.00           O  
HETATM    8  C5  UNL     1       1.030  -0.875  -0.298  1.00  0.00           C  
HETATM    9  C6  UNL     1       2.437  -0.635   0.178  1.00  0.00           C  
HETATM   10  O3  UNL     1       2.794   0.701   0.131  1.00  0.00           O  
HETATM   11  P1  UNL     1       4.366   0.924   0.669  1.00  0.00           P  
HETATM   12  O4  UNL     1       4.368   0.792   2.179  1.00  0.00           O  
HETATM   13  O5  UNL     1       5.418  -0.248   0.025  1.00  0.00           O  
HETATM   14  O6  UNL     1       4.956   2.433   0.182  1.00  0.00           O  
HETATM   15  C7  UNL     1       0.781  -0.274  -1.669  1.00  0.00           C  
HETATM   16  O7  UNL     1       1.125  -1.133  -2.698  1.00  0.00           O  
HETATM   17  C8  UNL     1      -0.718  -0.004  -1.618  1.00  0.00           C  
HETATM   18  O8  UNL     1      -1.313  -0.839  -2.576  1.00  0.00           O  
HETATM   19  C9  UNL     1      -3.320   0.490  -0.315  1.00  0.00           C  
HETATM   20  O9  UNL     1      -3.266   0.605  -1.554  1.00  0.00           O  
HETATM   21  N2  UNL     1      -4.440   0.908   0.301  1.00  0.00           N  
HETATM   22  H1  UNL     1      -3.624   0.205   3.424  1.00  0.00           H  
HETATM   23  H2  UNL     1      -1.592  -0.548   2.254  1.00  0.00           H  
HETATM   24  H3  UNL     1      -1.089  -1.604  -0.315  1.00  0.00           H  
HETATM   25  H4  UNL     1       0.816  -1.945  -0.358  1.00  0.00           H  
HETATM   26  H5  UNL     1       2.487  -0.948   1.241  1.00  0.00           H  
HETATM   27  H6  UNL     1       3.135  -1.279  -0.391  1.00  0.00           H  
HETATM   28  H7  UNL     1       6.051  -0.531   0.747  1.00  0.00           H  
HETATM   29  H8  UNL     1       4.413   3.121   0.629  1.00  0.00           H  
HETATM   30  H9  UNL     1       1.378   0.638  -1.745  1.00  0.00           H  
HETATM   31  H10 UNL     1       0.733  -2.046  -2.571  1.00  0.00           H  
HETATM   32  H11 UNL     1      -0.851   1.053  -1.822  1.00  0.00           H  
HETATM   33  H12 UNL     1      -1.456  -1.741  -2.148  1.00  0.00           H  
HETATM   34  H13 UNL     1      -5.237   1.315  -0.243  1.00  0.00           H  
CONECT    1    2    2
CONECT    2    3   21
CONECT    3    4    4   22
CONECT    4    5   23
CONECT    5    6   19
CONECT    6    7   17   24
CONECT    7    8
CONECT    8    9   15   25
CONECT    9   10   26   27
CONECT   10   11
CONECT   11   12   12   13   14
CONECT   13   28
CONECT   14   29
CONECT   15   16   17   30
CONECT   16   31
CONECT   17   18   32
CONECT   18   33
CONECT   19   20   20   21
CONECT   21   34
END

HMDB0000288
     RDKit          3D
Uridine 5'-monophosphate
 34 35  0  0  0  0  0  0  0  0999 V2000
   -5.6395    1.2168    2.2041 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5807    0.8203    1.6331 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5200    0.2808    2.3372 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3954   -0.1327    1.6631 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2658   -0.0394    0.3224 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0707   -0.4919   -0.2747 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0902   -0.1876    0.4727 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0299   -0.8747   -0.2979 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4367   -0.6347    0.1784 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7945    0.7008    0.1314 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3658    0.9238    0.6693 P   0  0  0  0  0  5  0  0  0  0  0  0
    4.3675    0.7915    2.1793 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4183   -0.2483    0.0245 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9565    2.4327    0.1824 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7806   -0.2739   -1.6689 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1253   -1.1334   -2.6980 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7177   -0.0042   -1.6175 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3130   -0.8393   -2.5757 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3200    0.4898   -0.3146 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2656    0.6045   -1.5543 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4405    0.9081    0.3005 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6239    0.2047    3.4235 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5917   -0.5479    2.2542 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0890   -1.6043   -0.3147 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8162   -1.9454   -0.3580 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4870   -0.9482    1.2410 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1347   -1.2785   -0.3908 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0509   -0.5306    0.7474 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4127    3.1214    0.6294 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3775    0.6384   -1.7445 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7328   -2.0462   -2.5710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8513    1.0532   -1.8224 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4555   -1.7406   -2.1481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2370    1.3149   -0.2428 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 11 14  1  0
  8 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
  5 19  1  0
 19 20  2  0
 19 21  1  0
 21  2  1  0
 17  6  1  0
  3 22  1  0
  4 23  1  0
  6 24  1  6
  8 25  1  6
  9 26  1  0
  9 27  1  0
 13 28  1  0
 14 29  1  0
 15 30  1  6
 16 31  1  0
 17 32  1  6
 18 33  1  0
 21 34  1  0
M  END

Synonyms

Value	Source
5'-UMP	ChEBI
5'Uridylic acid	ChEBI
pU	ChEBI
UMP	ChEBI
Uridine 5'-(dihydrogen phosphate)	ChEBI
Uridine 5'-phosphate	ChEBI
Uridine 5'-phosphoric acid	ChEBI
Uridine monophosphate	ChEBI
URIDINE-5'-monophosphATE	ChEBI
Uridylate	ChEBI
Uridylic acid	ChEBI
5'Uridylate	Generator
Uridine 5'-(dihydrogen phosphoric acid)	Generator
Uridine monophosphoric acid	Generator
URIDINE-5'-monophosphoric acid	Generator
Uridine 5'-monophosphoric acid	Generator
Uridine 5'-phosphorate	HMDB
Uridine mono(dihydrogen phosphate)	HMDB
Uridine phosphate	HMDB
Acids, uridylic	HMDB
monoPhosphate, uridine	HMDB
5'-monoPhosphate, uridine	HMDB
Uridylic acids	HMDB
Acid, uridylic	HMDB
Uridine 5' monophosphate	HMDB

Molecular Formula

C₉H₁₃N₂O₉P

Average Mass

324.1813

Monoisotopic Mass

324.035866536

IUPAC Name

{[(2R,3S,4R,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}phosphonic acid

Traditional Name

uridine monophosphate

CAS Registry Number

58-97-9

SMILES

O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COP(O)(O)=O)N1C=CC(=O)NC1=O

InChI Identifier

InChI=1S/C9H13N2O9P/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1

InChI Key

DJJCXFVJDGTHFX-XVFCMESISA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyrimidine ribonucleoside monophosphates. These are pyrimidine ribobucleotides with monophosphate group linked to the ribose moiety.

Kingdom

Organic compounds

Super Class

Nucleosides, nucleotides, and analogues

Class

Pyrimidine nucleotides

Sub Class

Pyrimidine ribonucleotides

Direct Parent

Pyrimidine ribonucleoside monophosphates

Alternative Parents

Substituents

Pyrimidine ribonucleoside monophosphate
Pentose phosphate
Pentose-5-phosphate
Glycosyl compound
N-glycosyl compound
Monosaccharide phosphate
Pentose monosaccharide
Pyrimidone
Monoalkyl phosphate
Hydropyrimidine
Monosaccharide
Organic phosphoric acid derivative
Phosphoric acid ester
Pyrimidine
Alkyl phosphate
Vinylogous amide
Heteroaromatic compound
Tetrahydrofuran
1,2-diol
Urea
Secondary alcohol
Lactam
Azacycle
Oxacycle
Organoheterocyclic compound
Organic oxygen compound
Alcohol
Organopnictogen compound
Organonitrogen compound
Organooxygen compound
Organic oxide
Hydrocarbon derivative
Organic nitrogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

pyrimidine ribonucleoside 5'-monophosphate (CHEBI:16695 )
uridine 5'-phosphate (CHEBI:16695 )
Ribonucleotides (C00105 )

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Property	Value	Source
Water Solubility	12 g/L	ALOGPS
logP	-1.8	ALOGPS
logP	-2.5	ChemAxon
logS	-1.4	ALOGPS
pKa (Strongest Acidic)	1.23	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	165.86 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	63.44 m³·mol⁻¹	ChemAxon
Polarizability	26.3 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Cytoplasm
Endoplasmic reticulum
Extracellular
Golgi apparatus
Lysosome
Mitochondria
Nucleus

Biospecimen Locations

Blood
Feces
Placenta
Saliva

Tissue Locations

Placenta

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species
MMDBp0191677	5'-nucleotidase	Unknown	P21589	Homo sapiens
MMDBp0191679	UMP-CMP kinase	Unknown	P30085	Homo sapiens
MMDBp0191680	Cytosolic 5'-nucleotidase 1B	Unknown	Q96P26	Homo sapiens
MMDBp0191681	Cytosolic 5'-nucleotidase 1A	Unknown	Q9BXI3	Homo sapiens
MMDBp0191682	5'(3')-deoxyribonucleotidase, cytosolic type	Unknown	Q8TCD5	Homo sapiens
MMDBp0191684	5'(3')-deoxyribonucleotidase, mitochondrial	Unknown	Q9NPB1	Homo sapiens
MMDBp0191757	Ectonucleoside triphosphate diphosphohydrolase 1	Unknown	P49961	Homo sapiens
MMDBp0191758	Soluble calcium-activated nucleotidase 1	Unknown	Q8WVQ1	Homo sapiens
MMDBp0191759	Ectonucleoside triphosphate diphosphohydrolase 3	Unknown	O75355	Homo sapiens
MMDBp0191778	Uridine-cytidine kinase 1	Unknown	Q9HA47	Homo sapiens
MMDBp0191790	Ectonucleotide pyrophosphatase/phosphodiesterase family member 1	Unknown	P22413	Homo sapiens
MMDBp0191865	Ectonucleotide pyrophosphatase/phosphodiesterase family member 3	Unknown	O14638	Homo sapiens
MMDBp0192044	Beta-1,4-galactosyltransferase 1	Unknown	P15291	Homo sapiens
MMDBp0192097	Inosine triphosphate pyrophosphatase	Unknown	Q9BY32	Homo sapiens
MMDBp0192263	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]	Unknown	P50583	Homo sapiens
MMDBp0192495	Ectonucleoside triphosphate diphosphohydrolase 4	Unknown	Q9Y227	Homo sapiens
MMDBp0192496	Ectonucleoside triphosphate diphosphohydrolase 6	Unknown	O75354	Homo sapiens
MMDBp0192497	Ectonucleoside triphosphate diphosphohydrolase 5	Unknown	O75356	Homo sapiens
MMDBp0192654	Uridine 5'-monophosphate synthase	Enzyme	P11172	Homo sapiens
MMDBp0192702	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase	Enzyme	Q9H3H5	Homo sapiens
MMDBp0192703	Uridine diphosphate glucose pyrophosphatase	Unknown	O95848	Homo sapiens
MMDBp0193590	Uridine-cytidine kinase 2	Unknown	Q9BZX2	Homo sapiens
MMDBp0193860	Cytosolic 5'-nucleotidase 3	Enzyme	Q9H0P0	Homo sapiens
MMDBp0193868	ENTPD4 protein	Enzyme	Q8NE73	Homo sapiens
MMDBp0193932	Cytosolic purine 5'-nucleotidase	Unknown	P49902	Homo sapiens
MMDBp0194184	UMP-CMP kinase 2, mitochondrial	Enzyme	Q5EBM0	Homo sapiens
MMDBp0194185	Uridine-cytidine kinase-like 1	Enzyme	Q9NWZ5	Homo sapiens
MMDBp0194442	Ectonucleoside triphosphate diphosphohydrolase 8	Unknown	Q5MY95	Homo sapiens
MMDBp0195609	Interferon-stimulated gene 20 kDa protein	Unknown	Q96AZ6	Homo sapiens
MMDBp0196047	N-acetylglucosamine-1-phosphotransferase subunits alpha/beta	Enzyme	Q3T906	Homo sapiens
MMDBp0196271	Uracil phosphoribosyltransferase homolog	Enzyme	Q96BW1	Homo sapiens

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0018378	UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-Œ±-D-glucosamine	Uridine 5'-monophosphate	UDP-2,3-diacylglucosamine hydrolase	Hydrolysis of bond	PathBank	31602464
MMDBr0018544	UDP-N-acetyl-Œ±-D-muramoyl-L-alanyl-Œ≥-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine	Uridine 5'-monophosphate	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Transfer of phospho-N-acetylmuramoyl-pentapeptide	PathBank	31602464
MMDBr0018616	Orotidylic acid	Uridine 5'-monophosphate	Orotidine 5'-phosphate decarboxylase	Carboxylation	PathBank	31602464
MMDBr0018617	Uridine 5'-monophosphate	Uridine 5'-diphosphate	Uridylate kinase	Phosphorylation	PathBank	31602464
MMDBr0018663	Uridine diphosphate-N-acetylglucosamine	Uridine 5'-monophosphate	Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	Transfer of the GlcNAc-1-phosphate moiety	PathBank	31602464
MMDBr0019236	Uridine diphosphate-N-acetylglucosamine	Uridine 5'-monophosphate	Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	Transfer of the GlcNAc-1-phosphate moiety	PathBank	31602464
MMDBr0019276	N-Acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine	Uridine 5'-monophosphate	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Transfer of phospho-N-acetylmuramoyl-pentapeptide	PathBank	31602464
MMDBr0019789	Orotidylic acid	Uridine 5'-monophosphate	Unknown Protein		PathBank	31602464
MMDBr0019790	Uridine 5'-monophosphate	Uridine 5'-diphosphate	Unknown Protein		PathBank	31602464
MMDBr0020030	Uridine diphosphate-N-acetylglucosamine	Uridine 5'-monophosphate	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase	Transfer of phosphate group	PathBank	31602464
MMDBr0024413	S-Adenosylmethionine	5'-Methylthioadenosine	tRNA-uridine aminocarboxypropyltransferase	Transfer of a tRNA-uridine aminocarboxypropyl group	RHEA	34755880
MMDBr0024414	S-Adenosylmethionine	5'-Methylthioadenosine	tRNA-uridine aminocarboxypropyltransferase	Transfer of a tRNA-uridine aminocarboxypropyl group	RHEA	34755880
MMDBr0024443	dolichyl phosphate	Uridine 5'-monophosphate	Putative UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase	Transfer of phosphate group	RHEA	34755880
MMDBr0024546	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	(6S)-5,6,7,8-tetrahydrofolic acid	Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO	Methylation	RHEA	34755880
MMDBr0024747	NADP(+)	Uridine 5'-monophosphate	Probable tRNA-dihydrouridine synthase	Synthesis	RHEA	34755880
MMDBr0024770	di-mu-Sulfido-diiron(1+)	L-Cysteine	Probable tRNA sulfurtransferase	Sulfuration	RHEA	34755880
MMDBr0025063	S-Adenosylmethionine	S-Adenosylhomocysteine	23S rRNA (uracil(747)-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025072	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (uracil(54)-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025075	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA large subunit methyltransferase E	Methylation	RHEA	34755880
MMDBr0025077	S-Adenosylmethionine	S-Adenosylhomocysteine	rRNA methyltransferase 2, mitochondrial	Methylation	RHEA	34755880
MMDBr0025100	S-Adenosylmethionine	S-Adenosylhomocysteine	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	Methylation	RHEA	34755880
MMDBr0025103	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase E	Methylation	RHEA	34755880
MMDBr0025107	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ	Methylation	RHEA	34755880
MMDBr0025118	S-Adenosylmethionine	S-Adenosylhomocysteine	23S rRNA (uridine(2479)-2'-O)-methyltransferase	Methylation	RHEA	34755880
MMDBr0025120	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (uracil-O(2)-)-methyltransferase	Methylation	RHEA	34755880
MMDBr0025135	S-Adenosylmethionine	S-Adenosylhomocysteine	25S rRNA (uridine(2843)-N(3))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025136	S-Adenosylmethionine	S-Adenosylhomocysteine	25S rRNA (uridine(2634)-N(3))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025152	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA/tmRNA (uracil-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025258	Uridine 5'-monophosphate	L-Cysteine	tRNA-specific 2-thiouridylase MnmA	2-Thiolation of uridine	RHEA	34755880
MMDBr0025281	S-Adenosylmethionine	S-Adenosylhomocysteine	rRNA methyltransferase 2, mitochondrial	Methylation	RHEA	34755880
MMDBr0025440	NADP(+)	Uridine 5'-monophosphate	tRNA-dihydrouridine(20/20a) synthase	Synthesis	RHEA	34755880
MMDBr0025441	Uridine 5'-monophosphate	NADP(+)	tRNA-dihydrouridine(20) synthase [NAD(P)+]	Synthesis	RHEA	34755880
MMDBr0025442	NAD	Uridine 5'-monophosphate	tRNA-dihydrouridine(20/20a) synthase	Synthesis	RHEA	34755880
MMDBr0025443	Uridine 5'-monophosphate	NAD	tRNA-dihydrouridine(20) synthase [NAD(P)+]	Synthesis	RHEA	34755880
MMDBr0025444	NADP(+)	Uridine 5'-monophosphate	tRNA-dihydrouridine(20/20a) synthase	Synthesis	RHEA	34755880
MMDBr0025445	Uridine 5'-monophosphate	NADP(+)	tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]	Synthesis	RHEA	34755880
MMDBr0025446	NAD	Uridine 5'-monophosphate	tRNA-dihydrouridine(20/20a) synthase	Synthesis	RHEA	34755880
MMDBr0025447	Uridine 5'-monophosphate	NAD	tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]	Synthesis	RHEA	34755880
MMDBr0025448	NAD	Uridine 5'-monophosphate	tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]	Synthesis	RHEA	34755880
MMDBr0025449	Uridine 5'-monophosphate	NAD	tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]	Synthesis	RHEA	34755880
MMDBr0025450	NADP(+)	Uridine 5'-monophosphate	tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]	Synthesis	RHEA	34755880
MMDBr0025451	Uridine 5'-monophosphate	NADP(+)	tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]	Synthesis	RHEA	34755880
MMDBr0025452	NADP(+)	Uridine 5'-monophosphate	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025453	Uridine 5'-monophosphate	NADP(+)	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025454	NAD	Uridine 5'-monophosphate	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025455	Uridine 5'-monophosphate	NAD	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025456	NADP(+)	Uridine 5'-monophosphate	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025457	Uridine 5'-monophosphate	NADP(+)	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025458	NAD	Uridine 5'-monophosphate	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025459	Uridine 5'-monophosphate	NAD	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025460	NADP(+)	Uridine 5'-monophosphate	tRNA-dihydrouridine(16) synthase	Synthesis	RHEA	34755880
MMDBr0025461	Uridine 5'-monophosphate	NADP(+)	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025462	NAD	Uridine 5'-monophosphate	tRNA-dihydrouridine(16) synthase	Synthesis	RHEA	34755880
MMDBr0025463	Uridine 5'-monophosphate	NAD	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025485	S-Adenosylmethionine	S-Adenosylhomocysteine	Putative ribosomal RNA methyltransferase PB17E12.10c	Methylation	RHEA	34755880
MMDBr0025505	NAD	Uridine 5'-monophosphate	Probable tRNA-dihydrouridine synthase	Synthesis	RHEA	34755880
MMDBr0025510	S-Adenosylmethionine	S-Adenosylhomocysteine	25S rRNA (uridine-N(3))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025733	S-Adenosylmethionine	5'-Deoxyadenosine	tRNA uridine(34) acetyltransferase	N-Acetylation	RHEA	34755880
MMDBr0025734	S-Adenosylmethionine	5'-Deoxyadenosine	tRNA uridine(34) acetyltransferase	N-Acetylation	RHEA	34755880
MMDBr0025777	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	(6S)-5,6,7,8-tetrahydrofolic acid	Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO	Methylation	RHEA	34755880
MMDBr0025778	S-Adenosylmethionine	5'-Methylthioadenosine	tRNA-uridine aminocarboxypropyltransferase	Transfer of a tRNA-uridine aminocarboxypropyl group	RHEA	34755880
MMDBr0025779	S-Adenosylmethionine	5'-Methylthioadenosine	tRNA-uridine aminocarboxypropyltransferase	Transfer of a tRNA-uridine aminocarboxypropyl group	RHEA	34755880
MMDBr0026024	Uridine 5'-monophosphate	Uridine	5'-nucleotidase SurE	Hydrolysis of nucleotide; Dephosphorylation	RHEA	34755880
MMDBr0026040	Uridine 3',5'-cyclic monophosphate	Uridine 5'-monophosphate	3',5'-cyclic-nucleotide phosphodiesterase	Formation of 2'-nucleotide products from 2',3'-cyclic substrates	RHEA	34755880
MMDBr0026066	Uridine triphosphate	Uridine 5'-monophosphate	Nucleoside triphosphate pyrophosphatase	Purine metabolism and pyrimidine metabolism; Hydrolysis of pyrophosphate; Dephosphorylation	RHEA	34755880
MMDBr0026070	Uridine triphosphate	Uridine 5'-monophosphate	Inosine triphosphate pyrophosphatase	Purine metabolism and pyrimidine metabolism	RHEA	34755880
MMDBr0026078	Uridine triphosphate	Uridine 5'-monophosphate	Golgi apyrase	Hydrolysis of phosphoanhydride bonds of nucleoside tri- and di-phosphates	RHEA	34755880
MMDBr0026084	Uridine 3',5'-phosphate	Uridine 5'-monophosphate	5'-3' exoribonuclease	5S, 16S and 23S rRNA 5'-end maturation; Dephosphorylation	RHEA	34755880
MMDBr0038685	Uridine 5'-monophosphate	Uracil	Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase	Hydrolysis of a nucleotide	RHEA	34755880

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference
Alzheimer's disease	Slight Increase	Association	Human Saliva	HMDB	23857558
Frontotemporal dementia	Slight Increase	Association	Human Saliva	HMDB	23857558

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	15	Human feces; Human sputum; Human ; Human unknown; Pig ; Human pleural fluid plaque; Human dental plaque; Human nasal swab; Human stool; Human feces; pleural fluid plaque; bal; Cattle ; Turkey ; Dog ; Chicken ; Human subgingival plaque; River trout ; Sheep ; Lion ; American dog tick ; Rat	Unknown; Metabolic reconstruction
Bacteria/Eubacteria	Firmicutes	483	Human feces; Human pleural fluid plaque; Pig ; Human sputum; Human ; Human subgingival plaque; Human saliva; Human urine; Human mucosa; Human supragingival plaque; Cattle ; Human stool; Catfish	Metabolic reconstruction
Bacteria/Eubacteria	Proteobacteria	577	Human feces; Human sputum; Human ; Human unknown; Pig ; Human pleural fluid plaque; Human dental plaque; Human nasal swab; Human stool; Human feces; pleural fluid plaque; bal; Cattle ; Turkey ; Dog ; Chicken ; Human subgingival plaque; River trout ; Sheep ; Lion ; American dog tick ; Rat	Unknown; Metabolic reconstruction
Bacteria	Actinobacteria	16	Human feces; Human sputum; Human bronchial brush; Human nasopharyngeal swab; Human pleural fluid plaque; Human dental plaque; Human ; Human supragingival plaque; Human mucosa; Human subgingival plaque; Human saliva; Cattle	Metabolic reconstruction
Bacteria/Eubacteria	Actinobacteria	163	Human feces; Human sputum; Human bronchial brush; Human nasopharyngeal swab; Human pleural fluid plaque; Human dental plaque; Human ; Human supragingival plaque; Human mucosa; Human subgingival plaque; Human saliva; Cattle	Metabolic reconstruction
Bacteria/Eubacteria	Verrucomicrobia	3	Human ; Human feces	Metabolic reconstruction
Bacteria/Eubacteria	Bacteroidetes	134	Human feces; Human appendix biopsy; Human ; Human stool; Human saliva; Human gastric fluid; Human urine; Human subgingival plaque; Human supragingival plaque	Metabolic reconstruction
Bacteria/Eubacteria	Synergistetes	3	Human feces	Metabolic reconstruction
Bacteria	Firmicutes	29	Human feces; Human pleural fluid plaque; Pig ; Human sputum; Human ; Human subgingival plaque; Human saliva; Human urine; Human mucosa; Human supragingival plaque; Cattle ; Human stool; Catfish	Metabolic reconstruction
Bacteria/Eubacteria	Spirochaetes	19	Human feces; Human ; Relapsing fever tick ; Pig	Metabolic reconstruction
Archaea	Thaumarchaeota	1		Metabolic reconstruction
Bacteria/Eubacteria	Fusobacteria	20	Human feces; Human	Metabolic reconstruction
Archaea	Euryarchaeota	5		Metabolic reconstruction
Bacteria	Candidatus melainabacteria	1	Human feces	Metabolic reconstruction
Bacteria/Eubacteria	Tenericutes	26	Human feces; Human ; Goat ; Pig	Metabolic reconstruction
Bacteria/Eubacteria	Planctomycetes	2	Human feces	Metabolic reconstruction
Archaea	Crenarchaeota	1		Metabolic reconstruction
Bacteria	Synergistetes	1	Human feces	Metabolic reconstruction
Eukaryota/Fungi	Ascomycota	51	Human feces; Human supragingival plaque; Human saliva	Unknown
Archaea/Archaea	Crenarchaeota	19		Metabolic reconstruction
Bacteria/Eubacteria	Aquificae	3
Archaea/Archaea	Euryarchaeota	36		Metabolic reconstruction
Bacteria/Eubacteria	Chloroflexi	10
Bacteria/Eubacteria	Deinococcus-thermus	6
Bacteria/Eubacteria	Dictyoglomi	2
Bacteria/Eubacteria	Cyanobacteria	33	Human
Archaea/Archaea	nah	1
Eukaryota/Fungi	Mucoromycota	5
Bacteria/Eubacteria	Thermotogae	10
Eukaryota/Fungi	Basidiomycota	7	Human feces
Bacteria	nah	1
Bacteria/Eubacteria	Elusimicrobia	2
Bacteria/Eubacteria	Chlamydiae	10	Human ; Sheep ; Cat
Archaea/Archaea	Thaumarchaeota	1		Metabolic reconstruction
Bacteria/Eubacteria	Chlorobi	11
Bacteria/Eubacteria	Acidobacteria	3
Bacteria/Eubacteria	Gemmatimonadetes	1
Bacteria/Eubacteria	Nitrospirae	1

Exposure Sources

Other Exposures

Source Type	Data Source	Reference
Drugs - Antimicrobial	U.S. Environmental Protection Agency	CompTox
Cosmetics	U.S. Environmental Protection Agency	CompTox
Domestics	U.S. Environmental Protection Agency	CompTox

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Units	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified							HMDB
Human Saliva	Detected and Quantified	1.20	0.55	uM	Adult (>18 years old)	Male	Alzheimer's disease	HMDB	23857558
Human Saliva	Detected and Quantified	1.61	1.18	uM	Adult (>18 years old)	Male	Frontotemporal lobe dementia	HMDB	23857558
Human Saliva	Detected and Quantified	2.38	3.06	uM	Adult (>18 years old)	Both	Lewy body disease	HMDB	23857558
Human Saliva	Detected and Quantified	1.90	1.07	uM	Adult (>18 years old)	Female	Normal	HMDB	23857558
Human Blood	Detected and Quantified	184.0	127.0	uM	Adult (>18 years old)	Both	Normal	HMDB	7877593
Human Saliva	Detected and Quantified	0.286	0.458	uM	Adult (>18 years old)	Male	Normal	HMDB	Sugimoto et al. (2013) Physiological and environmental parameters associated with mass spectrometry-based salivary metabolomic profiles.
Human Saliva	Detected and Quantified	0.508	1.22	uM	Adult (>18 years old)	Not Specified	Normal	HMDB	Sugimoto et al. (2013) Physiological and environmental parameters associated with mass spectrometry-based salivary metabolomic profiles.
Human Saliva	Detected and Quantified	0.510	0.518	uM	Adult (>18 years old)	Female	Normal	HMDB	Sugimoto et al. (2013) Physiological and environmental parameters associated with mass spectrometry-based salivary metabolomic profiles.
Human Saliva	Detected and Quantified	0.676	2.15	uM	Adult (>18 years old)	Both	Normal	HMDB	Sugimoto et al. (2013) Physiological and environmental parameters associated with mass spectrometry-based salivary metabolomic profiles.
Human Saliva	Detected and Quantified	0.708	1.98	uM	Adult (>18 years old)	Not Specified	Normal	HMDB	Sugimoto et al. (2013) Physiological and environmental parameters associated with mass spectrometry-based salivary metabolomic profiles.
Human Saliva	Detected and Quantified	0.893	1.08	uM	Adult (>18 years old)	Both	Normal	HMDB	Sugimoto et al. (2013) Physiological and environmental parameters associated with mass spectrometry-based salivary metabolomic profiles.
Human Saliva	Detected and Quantified	0.21	0.19	uM	Adult (>18 years old)	Both	Normal	HMDB	https://doi.org/10.1007/s11306-015-0840-5
Human Placenta	Detected but not Quantified				Not Specified	Not Specified	Normal	HMDB	34986597

External Links

HMDB ID

HMDB0000288

DrugBank ID

DB03685

Phenol Explorer Compound ID

Not Available

FooDB ID

KNApSAcK ID

Chemspider ID

KEGG Compound ID

BioCyc ID

BiGG ID

Wikipedia Link

Uridine_monophosphate

METLIN ID

Not Available

PubChem Compound

6030

PDB ID

Not Available

ChEBI ID

16695

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Munoz-Hoyos A, Molina-Carballo A, Macias M, Rodriguez-Cabezas T, Martin-Medina E, Narbona-Lopez E, Valenzuela-Ruiz A, Acuna-Castroviejo D: Comparison between tryptophan methoxyindole and kynurenine metabolic pathways in normal and preterm neonates and in neonates with acute fetal distress. Eur J Endocrinol. 1998 Jul;139(1):89-95. doi: 10.1530/eje.0.1390089. [PubMed:9703384 ]
Chiang EP, Bagley PJ, Roubenoff R, Nadeau M, Selhub J: Plasma pyridoxal 5'-phosphate concentration is correlated with functional vitamin B-6 indices in patients with rheumatoid arthritis and marginal vitamin B-6 status. J Nutr. 2003 Apr;133(4):1056-9. doi: 10.1093/jn/133.4.1056. [PubMed:12672918 ]
Holguin S, Martinez J, Chow C, Wurtman R: Dietary uridine enhances the improvement in learning and memory produced by administering DHA to gerbils. FASEB J. 2008 Nov;22(11):3938-46. doi: 10.1096/fj.08-112425. Epub 2008 Jul 7. [PubMed:18606862 ]
Elshenawy S, Pinney SE, Stuart T, Doulias PT, Zura G, Parry S, Elovitz MA, Bennett MJ, Bansal A, Strauss JF 3rd, Ischiropoulos H, Simmons RA: The Metabolomic Signature of the Placenta in Spontaneous Preterm Birth. Int J Mol Sci. 2020 Feb 4;21(3). pii: ijms21031043. doi: 10.3390/ijms21031043. [PubMed:32033212 ]

Showing metabocard for Uridine 5'-monophosphate (MMDBc0029491)

MOL for #<Metabolite:0x00007f9251366718>

3D MOL for #<Metabolite:0x00007f9251366718>

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Structure for #<Metabolite:0x00007f9251366718>

3D Structure for #<Metabolite:0x00007f9251366718>