MiMeDB: Pseudomonas putida (MMDBm0000334)

Microbe Identification

Microbe name

Pseudomonas putida

NCBI Taxonomy ID

303

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Proteobacteria

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Species

putida

Microbe Properties

Gram staining properties

Positive

Shape

Bacilli

Mobility

Yes

Flagellar presence

Yes

Number of membranes

Oxygen preference

Facultative

Optimal temperature

Not Available

Temperature range

Mesophilic

Habitat

Soil - Wastewater

Biotic relationship

Free living

Cell arrangement

Singles

Sporulation

Singles

Metabolism

Manganese oxidizer

Energy source

Heterotroph

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Lower respiratory tract		Not Available	BacDive	34718743
Human	Bronchi		Not Available	BacDive	34718743

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference
Human	Cystic fibrosis			BacDive

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0016636	Indole	Indoxyl	Indole-3-acetate monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016637	Indole	Indoxyl	Indole-3-acetate monooxygenase	Oxygenation	RHEA	34755880
MMDBr0024402	NAD	Hydrogen Ion	Aryl-alcohol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024448	alpha-Ketoisovaleric acid	Carbon dioxide	2-oxoisovalerate dehydrogenase subunit alpha	Dehydrogenation	RHEA	34755880
MMDBr0024453	(1R,4R)-camphor	(1R,4R,5R)-5-hydroxycamphor	Camphor 5-monooxygenase	Oxygenation	RHEA	34755880
MMDBr0024493	NAD	Hydrogen Ion	Dihydrolipoyl dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024498	Succinyl-CoA	CoA	Multifunctional 2-oxoglutarate metabolism enzyme	Dehydrogenation	RHEA	34755880
MMDBr0024513	(S)-mandelate	phenylglyoxylate	(S)-mandelate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024514	(S)-mandelate	phenylglyoxylate	(S)-mandelate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024533	L-Glutamine	Ammonium	Probable chemoreceptor glutamine deamidase CheD	Deamidation	RHEA	34755880
MMDBr0024537	di-mu-Sulfido-diiron(1+)	di-mu-Sulfido-diiron(2+)	Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component	Reduction	RHEA	34755880
MMDBr0024550	Acetyl-CoA	CoA	Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system	Dehydrogenation	RHEA	34755880
MMDBr0024608	Isobutyryl-CoA	CoA	Dihydrolipoyllysine-residue acyltransferase component of branched-chain alpha-ketoacid dehydrogenase complex	Dehydrogenation	RHEA	34755880
MMDBr0024650	di-mu-Sulfido-diiron(1+)	di-mu-Sulfido-diiron(2+)	Ferredoxin--NADP reductase	Dehydrogenation; Reduction	RHEA	34755880
MMDBr0024688	Acetyl-CoA	CoA	3-ketoacyl-CoA thiolase	Carbon‚Äìcarbon-bond formation	RHEA	34755880
MMDBr0024716	NAD	Hydrogen Ion	Fatty acid oxidation complex subunit alpha	Dehydrogenation	RHEA	34755880
MMDBr0024731	FMNH2	Flavin mononucleotide	Alkanesulfonate monooxygenase	Oxygenation	RHEA	34755880
MMDBr0024813	Dimethylallylpyrophosphate	diphosphate	tRNA dimethylallyltransferase	Transfer of a dimethylallyl group	RHEA	34755880
MMDBr0024834	S-Adenosylmethionine	S-Adenosylhomocysteine	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	Methylation	RHEA	34755880
MMDBr0024904	di-mu-Sulfido-diiron(1+)	di-mu-Sulfido-diiron(2+)	Putidaredoxin reductase CamA	Reduction	RHEA	34755880
MMDBr0024918	Ethanol	Acetaldehyde	Quinoprotein ethanol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0025066	S-Adenosylmethionine	S-Adenosylhomocysteine	Demethylmenaquinone methyltransferase	Methylation	RHEA	34755880
MMDBr0025067	L-Serine	diphosphate	Phosphoribosyl-dephospho-CoA transferase	Transfer of phosphoribosyl-dephospho-CoA	RHEA	34755880
MMDBr0025078	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase G	Methylation	RHEA	34755880
MMDBr0025216	Hydrogen Ion	NAD	NAD(P)H dehydrogenase (quinone)	Dehydrogenation; Redox reaction; Reduction	RHEA	34755880
MMDBr0025217	Hydrogen Ion	NADP(+)	NAD(P)H dehydrogenase (quinone)	Dehydrogenation; Redox reaction; Reduction	RHEA	34755880
MMDBr0025373	Iron(3+)	Hydrogen Ion	Quinoprotein ethanol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0025374	Iron(3+)	Hydrogen Ion	Quinoprotein ethanol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0025378	Copper	Cu(+)	Quinohemoprotein alcohol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0026126	L-Alanine	D-Alanine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026127	L-Lysine	D-Lysine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026128	L-Serine	D-Serine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026129	L-Proline	D-Proline	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026130	L-Cysteine	D-Cysteine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026131	L-Glutamine	D-Glutamine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026132	L-Aspartic acid	D-Aspartic acid	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026133	L-Methionine	D-methionine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026134	L-Valine	D-Valine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026135	L-Phenylalanine	D-phenylalanine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026136	L-Tryptophan	D-Tryptophan	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026137	L-Leucine	D-Leucine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026138	L-Tyrosine	D-Tyrosine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039017	L-Homoserine	D-homoserine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039018	L-Leucine	D-Leucine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039019	L-Phenylalanine	D-phenylalanine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039020	L-Proline	D-Proline	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039021	L-Threonine	D-Threonine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039022	L-Tyrosine	D-Tyrosine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039023	L-Valine	D-Valine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0024345	L-Tyrosine	Hydrogen Ion	Tyrosine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024346	NAD	Hydrogen Ion	Enoyl-[acyl-carrier-protein] reductase [NADH]	Reduction; Synthesis	RHEA	34755880
MMDBr0024360	L-Valine	diphosphate	Valine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024368	L-Isoleucine	diphosphate	Isoleucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024389	L-Leucine	diphosphate	Leucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024411	L-Serine	Hydrogen Ion	Type-2 serine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024415	(S)-4-Amino-5-oxopentanoate	Hydrogen Ion	Glutamyl-tRNA reductase	Reduction	RHEA	34755880
MMDBr0024418	L-Alanine	diphosphate	Alanine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024424	S-Adenosylmethionine	S-Adenosylhomocysteine	Protein-L-isoaspartate O-methyltransferase	Methylation	RHEA	34755880
MMDBr0024449	L-Methionine	diphosphate	Methionine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024459	Uridine triphosphate	diphosphate	Bifunctional uridylyltransferase/uridylyl-removing enzyme	Transfer of an uridylyl group	RHEA	34755880
MMDBr0024469	Geranyl diphosphate	diphosphate	tRNA 2-selenouridine synthase	Synthesis	RHEA	34755880
MMDBr0024470	Geranyl diphosphate	diphosphate	tRNA 2-selenouridine synthase	Synthesis	RHEA	34755880
MMDBr0024471	L-Methionine	L-Cysteine	Peptide methionine sulfoxide reductase MsrA	Reduction	RHEA	34755880
MMDBr0024474	L-Proline	diphosphate	Proline--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024477	Cytidine triphosphate	diphosphate	CCA-adding enzyme	Synthesis and repair of 3'-terminal CCA sequence of tRNA	RHEA	34755880
MMDBr0024483	L-Glutamine	L-Glutamic acid	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Amide group addition	RHEA	34755880
MMDBr0024500	Glycerol 3-phosphate	CoA	Glycerol-3-phosphate acyltransferase	Acylation	RHEA	34755880
MMDBr0024522	Glycine	diphosphate	Glycine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024535	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA large subunit methyltransferase F	Methylation	RHEA	34755880
MMDBr0024539	Tetra-mu3-sulfido-tetrairon(2+)	5'-Deoxyadenosine	Lipoyl synthase	Synthesis	RHEA	34755880
MMDBr0024548	(6S)-5,6,7,8-tetrahydrofolic acid	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	Probable aminomethyltransferase	Methylation	RHEA	34755880
MMDBr0024559	Adenosine triphosphate	Hydrogen Ion	Histidine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024565	Choline	Betaine aldehyde	Oxygen-dependent choline dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024568	L-Glutamine	L-Glutamic acid	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Amide group addition	RHEA	34755880
MMDBr0024578	Adenosine triphosphate	diphosphate	Cysteine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024590	Adenosine triphosphate	ADP	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0024593	ADP-alpha-D-glucose	Hydrogen Ion	Probable glycogen synthase	Synthesis	RHEA	34755880
MMDBr0024597	L-Aspartic acid	diphosphate	Aspartate--tRNA(Asp/Asn) ligase	Ligation	RHEA	34755880
MMDBr0024602	L-Tyrosine	diphosphate	Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme	Synthesis	RHEA	34755880
MMDBr0024625	NAD	3-dehydrocarnitine	L-carnitine dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024628	L-Phenylalanine	Hydrogen Ion	Phenylalanine--tRNA ligase beta subunit	Ligation	RHEA	34755880
MMDBr0024629	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC	Synthesis	RHEA	34755880
MMDBr0024630	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase A	Methylation	RHEA	34755880
MMDBr0024636	Phosphate	Ribose-1-phosphate	Probable 6-oxopurine nucleoside phosphorylase	Phosphorylation	RHEA	34755880
MMDBr0024644	L-Cystine	L-Cysteine	Peptide methionine sulfoxide reductase MsrA	Reduction	RHEA	34755880
MMDBr0024649	L-Glutamine	diphosphate	Glutamine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024656	L-Arginine	diphosphate	Arginine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024666	L-Lysine	diphosphate	Lysine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024705	Molybdate	Molybdate	Molybdenum import ATP-binding protein ModC	Transport	RHEA	34755880
MMDBr0024707	di-mu-Sulfido-diiron(1+)	5'-Deoxyadenosine	Biotin synthase	Synthesis	RHEA	34755880
MMDBr0024721	Selenophosphate	Phosphate	L-seryl-tRNA(Sec) selenium transferase	Transfer of L-seryl-tRNA(Sec) selenium	RHEA	34755880
MMDBr0024745	L-Glutamic acid	diphosphate	Glutamate--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024747	NADP(+)	Uridine 5'-monophosphate	Probable tRNA-dihydrouridine synthase	Synthesis	RHEA	34755880
MMDBr0024750	Guanosine triphosphate	formate	GTP cyclohydrolase-2	Hydrolysis of bond; Synthesis	RHEA	34755880
MMDBr0024751	lipid II(3−)	di-trans,octa-cis-undecaprenyl diphosphate	Penicillin-binding protein 2a	Glycan chain elongation	RHEA	34755880
MMDBr0024763	L-Tryptophan	Hydrogen Ion	Tryptophan--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024765	7-Aminomethyl-7-carbaguanine	Guanine	Putative queuine tRNA-ribosyltransferase	Transfer of a ribosyl group	RHEA	34755880
MMDBr0024766	S-Adenosylmethionine	S-Adenosylhomocysteine	23S rRNA (guanosine-2'-O-)-methyltransferase RlmB	Methylation	RHEA	34755880
MMDBr0024768	L-Methionine	L-Cysteine	Peptide methionine sulfoxide reductase MsrB	Reduction	RHEA	34755880
MMDBr0024770	di-mu-Sulfido-diiron(1+)	L-Cysteine	Probable tRNA sulfurtransferase	Sulfuration	RHEA	34755880
MMDBr0024774	Glycine	Carbon dioxide	Probable glycine dehydrogenase (decarboxylating) subunit 1	Dehydrogenation	RHEA	34755880
MMDBr0024778	(6S)-10-formyltetrahydrofolic acid	(6S)-5,6,7,8-tetrahydrofolic acid	Methionyl-tRNA formyltransferase	Transfer of a formyl group	RHEA	34755880
MMDBr0024779	N-Formyl-L-methionine	formate	Peptide deformylase 1	Removal of the N-terminal formyl group	RHEA	34755880
MMDBr0024781	S-Adenosylmethionine	S-Adenosylhomocysteine	Chemotaxis protein methyltransferase	Methylation	RHEA	34755880
MMDBr0024782	di-mu-Sulfido-diiron(2+)	di-mu-Sulfido-diiron(1+)	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	Reduction	RHEA	34755880
MMDBr0024787	L-Threonine	Hydrogen Ion	Threonine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024789	di-mu-Sulfido-diiron(2+)	di-mu-Sulfido-diiron(1+)	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	Reduction	RHEA	34755880
MMDBr0024808	1-Deoxy-D-xylulose 5-phosphate	2-[(2R,5Z)-2-Carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate	Thiazole synthase	Synthesis	RHEA	34755880
MMDBr0024825	Hydrogen Ion	ADP-D-glycero-beta-D-manno-heptose	Bifunctional protein HldE	Phosphorylation	RHEA	34755880
MMDBr0024839	D-glycero-beta-D-manno-heptose 1,7-bisphosphate	Phosphate	D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase	Dephosphorylation	RHEA	34755880
MMDBr0024851	L-Dihydroorotic acid	orotate	Dihydroorotate dehydrogenase (quinone)	Dehydrogenation	RHEA	34755880
MMDBr0024875	S-Adenosylmethionine	S-Adenosylhomocysteine	Ubiquinone biosynthesis O-methyltransferase	Methylation	RHEA	34755880
MMDBr0024883	S-Adenosylmethionine	Adenine	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	Isomerization	RHEA	34755880
MMDBr0024925	Glycerol 3-phosphate	Phosphate	Glycerol-3-phosphate acyltransferase	Acylation	RHEA	34755880
MMDBr0024967	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (guanine(37)-N1)-methyltransferase Trm5b	Methylation	RHEA	34755880
MMDBr0024971	L-Threonylcarbamoyladenylate	Hydrogen Ion	tRNA N6-adenosine threonylcarbamoyltransferase	Synthesis	RHEA	34755880
MMDBr0024977	S-Adenosylmethionine	5'-Deoxyadenosine	Ribosomal protein S12 methylthiotransferase RimO	Methylthiolation	RHEA	34755880
MMDBr0025050	L-Alanine	(S)-8-amino-7-oxononanoic acid	Putative 8-amino-7-oxononanoate synthase	Ligation; Synthesis	RHEA	34755880
MMDBr0025060	L-Serine	Hydrogen Ion	Type-2 serine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0025071	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (guanine-N(7)-)-methyltransferase	Methylation	RHEA	34755880
MMDBr0025072	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (uracil(54)-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025073	Selenophosphate	(2E)-thiogeraniol	tRNA 2-selenouridine synthase	Synthesis	RHEA	34755880
MMDBr0025074	Selenophosphate	(2E)-thiogeraniol	tRNA 2-selenouridine synthase	Synthesis	RHEA	34755880
MMDBr0025075	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA large subunit methyltransferase E	Methylation	RHEA	34755880
MMDBr0025079	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase C	Methylation	RHEA	34755880
MMDBr0025081	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA large subunit methyltransferase K/L	Methylation	RHEA	34755880
MMDBr0025082	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA large subunit methyltransferase G	Methylation	RHEA	34755880
MMDBr0025084	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase B	Methylation	RHEA	34755880
MMDBr0025085	S-Adenosylmethionine	S-Adenosylhomocysteine	Putative ribosomal RNA large subunit methyltransferase H	Methylation	RHEA	34755880
MMDBr0025092	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA large subunit methyltransferase M	Methylation	RHEA	34755880
MMDBr0025100	S-Adenosylmethionine	S-Adenosylhomocysteine	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	Methylation	RHEA	34755880
MMDBr0025102	di-mu-Sulfido-diiron(1+)	5'-Deoxyadenosine	Ribosomal RNA large subunit methyltransferase N	Methylation	RHEA	34755880
MMDBr0025105	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase H	Methylation	RHEA	34755880
MMDBr0025144	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase J	Methylation	RHEA	34755880
MMDBr0025145	di-mu-Sulfido-diiron(1+)	5'-Deoxyadenosine	Probable dual-specificity RNA methyltransferase RlmN	Methylation	RHEA	34755880
MMDBr0025149	L-Serine	Hydrogen Ion	Isocitrate dehydrogenase kinase/phosphatase	Dehydrogenation; Phosphorylation	RHEA	34755880
MMDBr0025152	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA/tmRNA (uracil-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025154	Water	Niacinamide	NAD-dependent protein deacetylase	Deacetylation	RHEA	34755880
MMDBr0025165	Phosphate	L-Tyrosine	Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme	Synthesis	RHEA	34755880
MMDBr0025167	L-Lysine	Hydrogen Ion	tRNA(Ile)-lysidine synthase	Synthesis	RHEA	34755880
MMDBr0025171	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA large subunit methyltransferase K/L	Methylation	RHEA	34755880
MMDBr0025190	S-Adenosylmethionine	S-Adenosylhomocysteine	Ubiquinone biosynthesis O-methyltransferase	Methylation	RHEA	34755880
MMDBr0025193	Adenosine triphosphate	ADP	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0025205	L-Lactic acid	Pyruvic acid	L-lactate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0025214	(S)-malate(2-)	Oxalacetic acid	Probable malate:quinone oxidoreductase	Redox reaction	RHEA	34755880
MMDBr0025215	ADP	Hydrogen Ion	Putative phosphoenolpyruvate synthase regulatory protein	Synthesis	RHEA	34755880
MMDBr0025258	Uridine 5'-monophosphate	L-Cysteine	tRNA-specific 2-thiouridylase MnmA	2-Thiolation of uridine	RHEA	34755880
MMDBr0025273	Water	Niacinamide	NAD-dependent protein deacylase	Deacylation	RHEA	34755880
MMDBr0025300	Hydrogen Ion	diphosphate	Putative phosphoenolpyruvate synthase regulatory protein	Synthesis	RHEA	34755880
MMDBr0025326	Guanosine triphosphate	5'-Deoxyadenosine	Probable GTP 3',8-cyclase	Cycle formation	RHEA	34755880
MMDBr0025389	L-Methionine	Methionine sulfoxide	Protein-methionine-sulfoxide reductase catalytic subunit MsrP	Reduction	RHEA	34755880
MMDBr0025432	carboxy-S-adenosyl-L-methionine	S-Adenosylhomocysteine	tRNA U34 carboxymethyltransferase	Methylation	RHEA	34755880
MMDBr0025440	NADP(+)	Uridine 5'-monophosphate	tRNA-dihydrouridine(20/20a) synthase	Synthesis	RHEA	34755880
MMDBr0025442	NAD	Uridine 5'-monophosphate	tRNA-dihydrouridine(20/20a) synthase	Synthesis	RHEA	34755880
MMDBr0025444	NADP(+)	Uridine 5'-monophosphate	tRNA-dihydrouridine(20/20a) synthase	Synthesis	RHEA	34755880
MMDBr0025446	NAD	Uridine 5'-monophosphate	tRNA-dihydrouridine(20/20a) synthase	Synthesis	RHEA	34755880
MMDBr0025460	NADP(+)	Uridine 5'-monophosphate	tRNA-dihydrouridine(16) synthase	Synthesis	RHEA	34755880
MMDBr0025462	NAD	Uridine 5'-monophosphate	tRNA-dihydrouridine(16) synthase	Synthesis	RHEA	34755880
MMDBr0025490	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal protein L11 methyltransferase	Methylation	RHEA	34755880
MMDBr0025493	L-Tyrosine	diphosphate	Protein adenylyltransferase MntA	Reversible transfer of an adenylyl group	RHEA	34755880
MMDBr0025494	L-Tyrosine	diphosphate	Protein adenylyltransferase SelO	Reversible transfer of an adenylyl group	RHEA	34755880
MMDBr0025495	L-Threonine	diphosphate	Protein adenylyltransferase SelO	Reversible transfer of an adenylyl group	RHEA	34755880
MMDBr0025496	L-Threonine	diphosphate	Protein adenylyltransferase SelO	Reversible transfer of an adenylyl group	RHEA	34755880
MMDBr0025505	NAD	Uridine 5'-monophosphate	Probable tRNA-dihydrouridine synthase	Synthesis	RHEA	34755880
MMDBr0025514	Acetyl-CoA	Malonyl-CoA	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Carboxylation	RHEA	34755880
MMDBr0025620	L-Cysteine	Sn-Glycerol-1-phosphate	Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase	Transfer of the diacylglyceryl group	RHEA	34755880
MMDBr0025630	S-Adenosylmethionine	5'-Deoxyadenosine	PqqA peptide cyclase	Cycle formation	RHEA	34755880
MMDBr0025638	Adenosine triphosphate	L-Cysteine	tRNA-cytidine(32) 2-sulfurtransferase	Sulfuration	RHEA	34755880
MMDBr0025639	Adenosine triphosphate	L-Cysteine	tRNA-cytidine(32) 2-sulfurtransferase	Sulfuration	RHEA	34755880
MMDBr0025650	Hydrogen Ion	Hydrogen Ion	NADH-quinone oxidoreductase subunit C/D	Redox reaction	RHEA	34755880
MMDBr0025654	L-Serine	diphosphate	Protein adenylyltransferase SelO	Reversible transfer of an adenylyl group	RHEA	34755880
MMDBr0025655	L-Serine	diphosphate	Protein adenylyltransferase SelO	Reversible transfer of an adenylyl group	RHEA	34755880
MMDBr0025716	Selenophosphate	(2E)-thiogeraniol	tRNA 2-selenouridine synthase	Synthesis	RHEA	34755880
MMDBr0025717	Selenophosphate	(2E)-thiogeraniol	tRNA 2-selenouridine synthase	Synthesis	RHEA	34755880
MMDBr0025921	Hydrogen Ion	NAD	FMN-dependent NADH:quinone oxidoreductase	Redox reaction	RHEA	34755880
MMDBr0025939	dTDP-beta-L-rhamnose	dTDP	Protein-arginine rhamnosyltransferase	Transfer of a rhamnosyl group	RHEA	34755880
MMDBr0025940	dTDP-beta-L-rhamnose	dTDP	Protein-arginine rhamnosyltransferase	Transfer of a rhamnosyl group	RHEA	34755880
MMDBr0026014	Phosphate	Uridine 5'-diphosphate	Ribonuclease PH	RNA degradation	RHEA	34755880
MMDBr0026015	Phosphate	Uridine 5'-diphosphate	Ribonuclease PH	RNA degradation	RHEA	34755880
MMDBr0026016	Phosphate	Guanosine 3',5'-bis(diphosphate)	Ribonuclease PH	RNA degradation	RHEA	34755880
MMDBr0026017	Phosphate	Adenosine diphosphate	Ribonuclease PH	RNA degradation	RHEA	34755880
MMDBr0026022	Adenosine monophosphate	Adenosine	5'-nucleotidase SurE	Hydrolysis of nucleotide; Dephosphorylation	RHEA	34755880
MMDBr0026023	Cytidine monophosphate	Adenosine	5'-nucleotidase SurE	Hydrolysis of nucleotide; Dephosphorylation	RHEA	34755880
MMDBr0026024	Uridine 5'-monophosphate	Uridine	5'-nucleotidase SurE	Hydrolysis of nucleotide; Dephosphorylation	RHEA	34755880
MMDBr0026025	Guanosine monophosphate	Guanosine	5'-nucleotidase SurE	Hydrolysis of nucleotide; Dephosphorylation	RHEA	34755880
MMDBr0026046	Uridine 5'-diphosphate	Uridine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026047	Uridine 5'-diphosphate	Cytidine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026048	Guanosine 3',5'-bis(diphosphate)	Guanosine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026085	Deoxyuridine-5'-diphosphate	Deoxyuridine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026086	2'-Deoxycytidine 5'-diphosphate	Deoxycytidine 5'-triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026087	2'-Deoxyadenosine 5'-diphosphate	Deoxyadenosine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026088	2'-Deoxyguanosine 5'-diphosphate	2'-Deoxyguanosine 5'-triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0024616	NAD	Niacinamide	Type VI secretion system spike protein VgrG1	Transfer of a ribosyl group	RHEA	34755880

Genome Data

Genome Link

MMDBm0000334

Genome Length

6244654 bp

# Predicted Proteins

5793

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-28 03:48:40 UTC

Reference

PMID: 17704766

Source Links

GenBank

NC_021505

MiMeDB ID	Organism	Strain	Serotype	Variant	NCBI Taxonomy	BaSyS2 Genome
MMDBm0002392	Pseudomonas putida KT2440	KT2440	-	-	160488	View
MMDBm0002403	Pseudomonas putida F1	F1	-	-	351746	View
MMDBm0002405	Pseudomonas putida GB-1	GB-1	-	-	76869	View
MMDBm0002406	Pseudomonas putida W619	W619	-	-	390235	View
MMDBm0002411	Pseudomonas putida S16	S16	-	-	1042876	View
MMDBm0580601	Pseudomonas putida B6-2	B6-2	-	-	1081940	View