| MMDBm0000015 | Akkermansia muciniphila ATCC BAA-835 | Eubacteria | Verrucomicrobia | Human | Not Available | RHEA |
| MMDBm0000028 | Bacillus halodurans C-125 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000045 | Bacteroides fragilis 638R | Eubacteria | Bacteroidetes | Human Feces | Not Available | RHEA |
| MMDBm0000046 | Bacteroides fragilis NCTC 9343 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000047 | Bacteroides fragilis YCH46 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000048 | Bacteroides helcogenes P 36-108 | Eubacteria | Bacteroidetes | Pig | Not Available | RHEA |
| MMDBm0000055 | Bacteroides thetaiotaomicron VPI-5482 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000120 | Clostridium botulinum A str. ATCC 19397 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000132 | Clostridium perfringens ATCC 13124 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000185 | Fusobacterium nucleatum subsp. nucleatum ATCC 25586 | Eubacteria | Fusobacteria | Human | Not Available | RHEA |
| MMDBm0000221 | Ochrobactrum anthropi ATCC 49188 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000460 | Bacillus anthracis | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001170 | Acidiphilium cryptum JF-5 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001192 | Actinobacillus succinogenes 130Z | Eubacteria | Proteobacteria | Cattle | Not Available | RHEA |
| MMDBm0001197 | Aeromonas salmonicida subsp. salmonicida A449 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001198 | Aeromonas hydrophila subsp. hydrophila ATCC 7966 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001200 | Agrobacterium tumefaciens str. C58 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001209 | Vibrio fischeri ES114 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001210 | Vibrio fischeri MJ11 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001211 | Aliivibrio salmonicida LFI1238 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001222 | Anaeromyxobacter dehalogenans 2CP-C | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001223 | Anaeromyxobacter sp. Fw109-5 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001224 | Anaeromyxobacter sp. K | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001225 | Anaeromyxobacter dehalogenans 2CP-1 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
