| MMDBm0000026 | Bacillus cereus AH187 (F4810/72) | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000027 | Bacillus cytotoxicus NVH 391-98 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000028 | Bacillus halodurans C-125 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000064 | Bifidobacterium adolescentis ATCC 15703 | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000075 | Bifidobacterium longum DJO10A | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000076 | Bifidobacterium longum NCC2705 | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000079 | Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000097 | Brevibacillus brevis NBRC 100599 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000116 | Clostridium beijerinckii NCIMB 8052 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000162 | Escherichia coli CFT073 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000167 | Escherichia coli SMS-3-5 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000185 | Fusobacterium nucleatum subsp. nucleatum ATCC 25586 | Eubacteria | Fusobacteria | Human | Not Available | RHEA |
| MMDBm0000218 | Methanobrevibacter smithii ATCC 35061 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0000281 | Streptococcus thermophilus CNRZ1066 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000282 | Streptococcus thermophilus LMD-9 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000363 | Enterobacter cloacae | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000368 | Shigella flexneri | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000411 | Rhodobacter capsulatus | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000460 | Bacillus anthracis | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000474 | Clostridium pasteurianum | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0000489 | Clostridium novyi | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0000556 | Methanococcus vannielii | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0000584 | Candida albicans | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0001172 | Acidithiobacillus ferrooxidans ATCC 23270 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
