| MMDBm0000027 | Bacillus cytotoxicus NVH 391-98 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000028 | Bacillus halodurans C-125 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000064 | Bifidobacterium adolescentis ATCC 15703 | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000075 | Bifidobacterium longum DJO10A | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000076 | Bifidobacterium longum NCC2705 | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000079 | Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000109 | Clostridioides difficile 630 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000116 | Clostridium beijerinckii NCIMB 8052 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000162 | Escherichia coli CFT073 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000167 | Escherichia coli SMS-3-5 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000169 | Escherichia coli UTI89 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000171 | Eubacterium eligens ATCC 27750 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000185 | Fusobacterium nucleatum subsp. nucleatum ATCC 25586 | Eubacteria | Fusobacteria | Human | Not Available | RHEA |
| MMDBm0000368 | Shigella flexneri | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000413 | Rhodospirillum rubrum | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0000460 | Bacillus anthracis | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001030 | Agrobacterium tumefaciens | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001177 | Acidothermus cellulolyticus 11B | Eubacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0001178 | Acidovorax citrulli AAC00-1 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001192 | Actinobacillus succinogenes 130Z | Eubacteria | Proteobacteria | Cattle | Not Available | RHEA |
| MMDBm0001200 | Agrobacterium tumefaciens str. C58 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001202 | Agrobacterium radiobacter K84 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001204 | Rhodoferax ferrireducens T118 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001209 | Vibrio fischeri ES114 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
