| MMDBm0000023 | Arcobacter butzleri RM4018 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000026 | Bacillus cereus AH187 (F4810/72) | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000028 | Bacillus halodurans C-125 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000055 | Bacteroides thetaiotaomicron VPI-5482 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000057 | Bacteroides vulgatus ATCC 8482 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000097 | Brevibacillus brevis NBRC 100599 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000100 | Campylobacter fetus subsp. fetus 82-40 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000101 | Campylobacter hominis ATCC BAA-381 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000116 | Clostridium beijerinckii NCIMB 8052 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000171 | Eubacterium eligens ATCC 27750 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000198 | Lachnoclostridium phytofermentans ISDg | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000221 | Ochrobactrum anthropi ATCC 49188 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000232 | Parabacteroides distasonis ATCC 8503 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000281 | Streptococcus thermophilus CNRZ1066 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000282 | Streptococcus thermophilus LMD-9 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000334 | Pseudomonas putida | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000351 | Acinetobacter calcoaceticus | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000460 | Bacillus anthracis | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000466 | Bacillus pumilus | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0000493 | Lactobacillus casei | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000557 | Methanococcus voltae | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0001162 | Acaryochloris marina MBIC11017 | Eubacteria | Cyanobacteria | Not Available | Not Available | RHEA |
| MMDBm0001170 | Acidiphilium cryptum JF-5 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
