| MMDBm0000026 | Bacillus cereus AH187 (F4810/72) | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000027 | Bacillus cytotoxicus NVH 391-98 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000028 | Bacillus halodurans C-125 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000055 | Bacteroides thetaiotaomicron VPI-5482 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000064 | Bifidobacterium adolescentis ATCC 15703 | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000075 | Bifidobacterium longum DJO10A | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000076 | Bifidobacterium longum NCC2705 | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000079 | Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000116 | Clostridium beijerinckii NCIMB 8052 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000120 | Clostridium botulinum A str. ATCC 19397 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000162 | Escherichia coli CFT073 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000218 | Methanobrevibacter smithii ATCC 35061 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0000221 | Ochrobactrum anthropi ATCC 49188 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000282 | Streptococcus thermophilus LMD-9 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000368 | Shigella flexneri | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000460 | Bacillus anthracis | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000556 | Methanococcus vannielii | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0000584 | Candida albicans | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0001066 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001170 | Acidiphilium cryptum JF-5 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001177 | Acidothermus cellulolyticus 11B | Eubacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0001178 | Acidovorax citrulli AAC00-1 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001179 | Acidovorax sp. JS42 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
