| MMDBm0000002 | Micromonospora aurantiaca ATCC 27029 | Eubacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000016 | Alcaligenes faecalis subsp. faecalis NBRC 13111 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000026 | Bacillus cereus AH187 (F4810/72) | Eubacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000027 | Bacillus cytotoxicus NVH 391-98 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000030 | Bacillus pseudofirmus OF4 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000032 | Bacillus timonensis 10403023 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000096 | Brevibacillus borstelensis AK1 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000097 | Brevibacillus brevis NBRC 100599 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000332 | Pseudomonas fluorescens | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000337 | Ralstonia pickettii | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000460 | Bacillus anthracis | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000464 | Bacillus mycoides | Eubacteria | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0000767 | Bacillus pseudofirmus | Eubacteria | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0001035 | Bacillus cereus | Eubacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0001166 | Achromobacter xylosoxidans A8 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001188 | Acinetobacter baumannii AB0057 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001249 | Bacillus cereus ATCC 10987 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001252 | Bacillus cereus ATCC 14579 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001254 | Bacillus thuringiensis serovar konkukian str. 97-27 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001256 | Bacillus cereus E33L | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001257 | Bacillus clausii KSM-K16 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001258 | Bacillus thuringiensis str. Al Hakam | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001261 | Bacillus weihenstephanensis KBAB4 | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0001264 | Bacillus cereus G9842 | Eubacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
