| MMDBm0000024 | Bacillus altitudinis 41KF2b | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000025 | Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000026 | Bacillus cereus AH187 (F4810/72) | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000027 | Bacillus cytotoxicus NVH 391-98 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000032 | Bacillus timonensis 10403023 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000033 | Bacillus vallismortis DV1-F-3 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000096 | Brevibacillus borstelensis AK1 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000097 | Brevibacillus brevis NBRC 100599 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000125 | Clostridium clostridioforme CM201 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000194 | Klebsiella aerogenes KCTC 2190 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000226 | Paenibacillus alvei DSM 29 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000227 | Paenibacillus barengoltzii G22 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000228 | Paenibacillus daejeonensis DSM 15491 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000460 | Bacillus anthracis | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000464 | Bacillus mycoides | Eubacteria | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0000767 | Bacillus pseudofirmus | Eubacteria | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0001035 | Bacillus cereus | Eubacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0001067 | Klebsiella variicola | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001170 | Acidiphilium cryptum JF-5 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001205 | Alcanivorax borkumensis SK2 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001231 | Aquifex aeolicus VF5 | Eubacteria | Aquificae | Not Available | Not Available | RHEA |
| MMDBm0001247 | Azotobacter vinelandii DJ | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001248 | Bacillus subtilis subsp. subtilis str. 168 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001249 | Bacillus cereus ATCC 10987 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
