Showing metabocard for CDP-DG(16:0/18:1(9Z)) (MMDBc0029854)

Record Information
Version1.0
StatusDetected and Quantified
Creation Date2021-11-17 23:44:22 UTC
Update Date2022-08-31 17:21:56 UTC
Metabolite IDMMDBc0029854
Metabolite Identification
Common NameCDP-DG(16:0/18:1(9Z))
DescriptionCDP-DG(16:0/18:1(9Z)) belongs to the family of CDP-diacylglycerols. It is a glycerophospholipid containing a diacylglycerol, with a cytidine diphosphate attached to the oxygen O1 or O2 of the glycerol part. As is the case with diacylglycerols, phosphatidylserines can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 atoms. CDP-DG(16:0/18:1(9Z)), in particular, consists of one hexadecanoyl chain to C-1 atom, and one 9Z-octadecenoyl to the C-2 atom. In E. coli glycerophospholipid metabolism, The biosynthesis of CDP-diacylglycerol (CDP-DG) involves condensation of phosphatidic acid (PA) and cytidine triphosphate, with elimination of pyrophosphate, catalysed by the enzyme CDP-diacylglycerol synthase. The resulting CDP-diacylglycerol can be utilized immediately for the synthesis of phosphatidylglycerol (PG), and thence cardiolipin (CL), and of phosphatidylinositol (PI). CDP-DG(16:0/18:1(9Z)) is also a substrate of CDP-diacylglycerol pyrophosphatase. It is involved in CDP-diacylglycerol degradation pathway.
Structure
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for #<Metabolite:0x0000555bb35dd220>

CDP-DG(16:0/18:1(9Z))
  Mrv1652308101904172D          

 67 68  0  0  1  0            999 V2000
   17.4451   -4.0157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4838   -4.5706    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   15.5226   -4.0157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4061   -4.5706    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.5612   -4.5706    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.7337   -5.6806    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.3206   -5.7230    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   19.4768   -4.2072    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   19.4768   -5.3368    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.8027   -4.5411    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.4768   -3.1857    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.8732   -4.1777    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   21.8732   -5.3072    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.1992   -4.5116    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.8732   -3.1563    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.1589   -6.7486    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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   26.8357   -7.5484    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.1528   -7.5601    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.1017   -5.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.4120   -3.3822    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   28.4120   -4.2072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   29.1119   -4.5018    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   15.0193   -6.0931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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 65 66  1  0  0  0  0
 66 67  1  0  0  0  0
M  END
Download

3D MOL for #<Metabolite:0x0000555bb35dd220>

HMDB0006971
     RDKit          3D
CDP-DG(16:0/18:1(9Z))
149150  0  0  0  0  0  0  0  0999 V2000
   -3.4675   -3.0319    1.6415 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0819   -3.5669    1.7287 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6565   -4.1522    3.0293 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6412   -3.2745    4.2324 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9686   -2.6796    4.6139 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8453   -1.9113    5.9475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1617   -1.4287    6.3715 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9000   -0.3724    5.6608 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0810   -0.5115    4.2344 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7950    0.4512    3.3324 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2879    1.7376    3.6766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0456    2.3746    3.2401 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8455    2.7073    1.8164 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.6169    1.2021    1.0462 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9685    0.8394    0.6125 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0824    0.4105   -0.7406 O   0  0  0  0  0  0  0  0  0  0  0  0
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    6.7258   -1.8288   -2.6516 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.6878    3.9809   -1.2900 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0459    3.9684   -2.6663 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -2.5030    0.7216   -3.4859 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8411    1.0053   -3.6936 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7935   -0.0038   -4.0374 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2201    2.2896   -3.5523 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3420    3.2583   -3.2246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7960    4.4010   -3.1234 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2977    5.4146   -2.8562 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1826    5.9893   -1.9384 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0796    5.9344   -2.3610 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0315    7.2300   -1.8916 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1394   -3.4638    2.4025 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9453   -3.3519    0.6530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5365   -1.9201    1.5798 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3272   -2.8195    1.3741 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.8857   -2.4549    4.1345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1765   -1.8725    3.8610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7463   -3.4387    4.7076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1047   -1.0765    5.8236 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4287   -2.5793    6.7190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8178   -2.3775    6.4657 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0605   -1.1411    7.4902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9452   -0.3270    6.1573 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4135    0.6257    5.8826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4936   -1.4677    3.8408 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9971    0.1736    2.3138 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for #<Metabolite:0x0000555bb35dd220>

CDP-DG(16:0/18:1(9Z))
  Mrv1652308101904172D          

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M  END
> <DATABASE_ID>
MMDBc0029854

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@](COC(=O)CCCCCCCCCCCCCCC)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H](C(O)[C@H]1O)N1C=CC(N)=NC1=O)OC(=O)CCCCCCC\C=C/CCCCCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C46H83N3O15P2/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-42(51)62-38(35-59-41(50)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2)36-60-65(55,56)64-66(57,58)61-37-39-43(52)44(53)45(63-39)49-34-33-40(47)48-46(49)54/h17-18,33-34,38-39,43-45,52-53H,3-16,19-32,35-37H2,1-2H3,(H,55,56)(H,57,58)(H2,47,48,54)/b18-17-/t38-,39-,43+,44?,45-/m1/s1

> <INCHI_KEY>
FPQIENQTTUVFMM-BLPYJZGISA-N

> <FORMULA>
C46H83N3O15P2

> <MOLECULAR_WEIGHT>
980.124

> <EXACT_MASS>
979.529942981

> <JCHEM_ACCEPTOR_COUNT>
12

> <JCHEM_ATOM_COUNT>
149

> <JCHEM_AVERAGE_POLARIZABILITY>
107.84761637544887

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3R,5R)-5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}({[(2R)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propoxy](hydroxy)phosphoryl}oxy)phosphinic acid

> <ALOGPS_LOGP>
6.51

> <JCHEM_LOGP>
10.083965452000001

> <ALOGPS_LOGS>
-5.36

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
3.2716255536258676

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8631673662376511

> <JCHEM_PKA_STRONGEST_BASIC>
-0.03198989821723941

> <JCHEM_POLAR_SURFACE_AREA>
263.27

> <JCHEM_REFRACTIVITY>
250.52910000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
43

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.33e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(2R,3R,5R)-5-(4-amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy([(2R)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propoxy(hydroxy)phosphoryl]oxy)phosphinic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for #<Metabolite:0x0000555bb35dd220>

HMDB0006971
     RDKit          3D
CDP-DG(16:0/18:1(9Z))
149150  0  0  0  0  0  0  0  0999 V2000
   -3.4675   -3.0319    1.6415 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0819   -3.5669    1.7287 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6565   -4.1522    3.0293 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6412   -3.2745    4.2324 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9686   -2.6796    4.6139 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8453   -1.9113    5.9475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1617   -1.4287    6.3715 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9000   -0.3724    5.6608 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0810   -0.5115    4.2344 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7950    0.4512    3.3324 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2879    1.7376    3.6766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0456    2.3746    3.2401 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8455    2.7073    1.8164 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6198    1.6105    0.8683 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2884    0.9188    1.1970 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9675   -0.1544    0.1992 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3849   -0.7327    0.5846 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4013    0.3419    0.4675 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1982    1.3691   -0.1971 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6325    0.2400    1.1092 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6169    1.2021    1.0462 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9685    0.8394    0.6125 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0824    0.4105   -0.7406 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3522    0.0656   -1.1501 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3191    0.1094   -0.3563 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5995   -0.3586   -2.5546 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7258   -1.8288   -2.6516 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0036   -2.4377   -3.9529 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1544   -2.5441   -5.1035 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4369   -1.5178   -5.8304 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3059   -0.7396   -5.3340 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0580   -1.4544   -4.9588 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0945   -2.4779   -3.8981 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6284   -2.9819   -3.7478 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6308   -4.1043   -2.7211 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2556   -4.6616   -2.4850 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3638   -5.8008   -1.5167 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9597   -5.4119   -0.1913 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9981   -6.6891    0.6480 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5974   -6.4272    2.0072 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6642    2.0462    2.3539 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4245    2.6775    2.4769 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2793    3.6667    3.8046 P   0  0  0  0  0  5  0  0  0  0  0  0
    0.9021    3.4649    4.4215 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4397    3.3603    5.0026 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3637    5.3082    3.3430 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9855    5.7935    2.5299 P   0  0  0  0  0  5  0  0  0  0  0  0
    1.1444    7.2495    2.0962 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4042    5.7284    3.4838 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8012    4.8294    1.1265 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4935    5.6437    0.0361 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3177    4.9156   -1.2521 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6878    3.9809   -1.2900 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0459    3.9684   -2.6663 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0420    3.0411   -3.0125 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6372    1.7428   -3.1508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5030    0.7216   -3.4859 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8411    1.0053   -3.6936 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7935   -0.0038   -4.0374 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2201    2.2896   -3.5523 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3420    3.2583   -3.2246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7960    4.4010   -3.1234 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2977    5.4146   -2.8562 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1826    5.9893   -1.9384 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0796    5.9344   -2.3610 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0315    7.2300   -1.8916 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1394   -3.4638    2.4025 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9453   -3.3519    0.6530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5365   -1.9201    1.5798 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3272   -2.8195    1.3741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9859   -4.3978    0.9408 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3074   -5.0591    3.2661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6087   -4.5894    2.9546 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2598   -3.8770    5.1052 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8857   -2.4549    4.1345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1765   -1.8725    3.8610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7463   -3.4387    4.7076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1047   -1.0765    5.8236 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4287   -2.5793    6.7190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8178   -2.3775    6.4657 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0605   -1.1411    7.4902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9452   -0.3270    6.1573 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4135    0.6257    5.8826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4936   -1.4677    3.8408 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9971    0.1736    2.3138 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1130    2.5210    3.2416 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3821    1.9949    4.8034 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8620    3.3523    3.8298 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1318    1.7704    3.6061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9686    3.4253    1.7162 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7113    3.3259    1.4198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3653    0.8265    0.8591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4961    1.9882   -0.1963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3393    0.4933    2.2297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5347    1.6882    1.1894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8057    0.2772   -0.8220 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7549   -0.8967    0.0817 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6174   -1.5764   -0.1016 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3007   -1.1192    1.6069 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2236    1.9681    0.2669 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6094    1.7692    0.6672 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4410    0.0283    1.2344 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6437    0.0437   -2.8592 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9040    0.1715   -3.1668 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8299   -2.3297   -2.1672 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5560   -2.1189   -1.9205 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0654   -2.0802   -4.3065 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3197   -3.5427   -3.6928 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9311   -2.9309   -5.9628 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5786   -3.5506   -5.0836 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0860   -1.9292   -6.8694 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2226   -0.7621   -6.2113 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9976   -0.0877   -6.2746 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4638    0.0598   -4.6085 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.5634   -1.8424   -5.9064 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7056   -3.3642   -4.0392 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4083   -2.0482   -2.9006 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0498   -2.1222   -3.3685 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2447   -3.2844   -4.7232 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3046   -4.8856   -3.0675 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9670   -3.6241   -1.7757 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2206   -5.0113   -3.4131 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1 67  1  0
  1 68  1  0
  1 69  1  0
  2 70  1  0
  2 71  1  0
  3 72  1  0
  3 73  1  0
  4 74  1  0
  4 75  1  0
  5 76  1  0
  5 77  1  0
  6 78  1  0
  6 79  1  0
  7 80  1  0
  7 81  1  0
  8 82  1  0
  8 83  1  0
  9 84  1  0
 10 85  1  0
 11 86  1  0
 11 87  1  0
 12 88  1  0
 12 89  1  0
 13 90  1  0
 13 91  1  0
 14 92  1  0
 14 93  1  0
 15 94  1  0
 15 95  1  0
 16 96  1  0
 16 97  1  0
 17 98  1  0
 17 99  1  0
 21100  1  6
 22101  1  0
 22102  1  0
 26103  1  0
 26104  1  0
 27105  1  0
 27106  1  0
 28107  1  0
 28108  1  0
 29109  1  0
 29110  1  0
 30111  1  0
 30112  1  0
 31113  1  0
 31114  1  0
 32115  1  0
 32116  1  0
 33117  1  0
 33118  1  0
 34119  1  0
 34120  1  0
 35121  1  0
 35122  1  0
 36123  1  0
 36124  1  0
 37125  1  0
 37126  1  0
 38127  1  0
 38128  1  0
 39129  1  0
 39130  1  0
 40131  1  0
 40132  1  0
 40133  1  0
 41134  1  0
 41135  1  0
 45136  1  0
 49137  1  0
 51138  1  0
 51139  1  0
 52140  1  6
 54141  1  6
 56142  1  0
 57143  1  0
 59144  1  0
 59145  1  0
 63146  1  0
 64147  1  0
 65148  1  6
 66149  1  0
M  END
Download

PDB for #<Metabolite:0x0000555bb35dd220>

HEADER    PROTEIN                                 10-AUG-19   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: CDP-DG(16:0/18:1(9Z))                             
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-AUG-19         0                                  
HETATM    1  C   UNK     0      32.564  -7.496   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      30.770  -8.532   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      28.976  -7.496   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      34.358  -8.532   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      27.181  -8.532   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      29.370 -10.604   0.000  0.00  0.00           O+0
HETATM    7  H   UNK     0      32.332 -10.683   0.000  0.00  0.00           H+0
HETATM    8  P   UNK     0      36.357  -7.853   0.000  0.00  0.00           P+0
HETATM    9  O   UNK     0      36.357  -9.962   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      38.832  -8.477   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      36.357  -5.947   0.000  0.00  0.00           O+0
HETATM   12  P   UNK     0      40.830  -7.798   0.000  0.00  0.00           P+0
HETATM   13  O   UNK     0      40.830  -9.907   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      43.305  -8.422   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      40.830  -5.892   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      46.963 -12.597   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      50.084 -12.597   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      51.776 -10.958   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      48.636  -9.722   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      44.997 -10.940   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      50.093 -14.090   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0      46.952 -14.112   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      44.990  -9.400   0.000  0.00  0.00           C+0
HETATM   24  N   UNK     0      53.036  -6.313   0.000  0.00  0.00           N+0
HETATM   25  C   UNK     0      53.036  -7.853   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      51.702  -5.543   0.000  0.00  0.00           C+0
HETATM   27  N   UNK     0      51.702  -8.624   0.000  0.00  0.00           N+0
HETATM   28  C   UNK     0      50.368  -6.313   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      50.368  -7.853   0.000  0.00  0.00           C+0
HETATM   30  N   UNK     0      51.702  -4.003   0.000  0.00  0.00           N+0
HETATM   31  O   UNK     0      54.342  -8.403   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      25.847  -7.762   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      25.847  -6.322   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      24.514  -8.533   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      23.181  -7.762   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      21.848  -8.533   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      20.515  -7.762   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      19.182  -8.533   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      17.849  -7.762   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      16.516  -8.533   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      15.183  -7.762   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      13.850  -8.533   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      12.517  -7.762   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      11.184  -8.533   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       9.851  -7.762   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0       8.518  -8.533   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0       7.185  -7.762   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0       5.852  -8.533   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      28.036 -11.374   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0      28.036 -12.814   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0      26.703 -10.603   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      25.370 -11.374   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      24.037 -10.603   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      22.704 -11.374   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      21.371 -10.603   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      20.038 -11.374   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      18.705 -10.603   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      17.372 -11.374   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      15.831 -11.374   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      14.498 -10.603   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0      13.165 -11.374   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0      11.832 -10.603   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0      10.499 -11.374   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0       9.166 -10.603   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0       7.833 -11.374   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0       6.500 -10.603   0.000  0.00  0.00           C+0
HETATM   67  C   UNK     0       5.167 -11.374   0.000  0.00  0.00           C+0
CONECT    1    2    4                                                       
CONECT    2    1    6    7    3                                             
CONECT    3    2    5                                                       
CONECT    4    1    8                                                       
CONECT    5    3   32                                                       
CONECT    6    2   49                                                       
CONECT    7    2                                                            
CONECT    8    4    9   10   11                                             
CONECT    9    8                                                            
CONECT   10    8   12                                                       
CONECT   11    8                                                            
CONECT   12   10   13   14   15                                             
CONECT   13   12                                                            
CONECT   14   12   23                                                       
CONECT   15   12                                                            
CONECT   16   17   22   20                                                  
CONECT   17   16   18   21                                                  
CONECT   18   19   17   27                                                  
CONECT   19   18   20                                                       
CONECT   20   19   16   23                                                  
CONECT   21   17                                                            
CONECT   22   16                                                            
CONECT   23   14   20                                                       
CONECT   24   25   26                                                       
CONECT   25   24   27   31                                                  
CONECT   26   24   28   30                                                  
CONECT   27   18   25   29                                                  
CONECT   28   26   29                                                       
CONECT   29   27   28                                                       
CONECT   30   26                                                            
CONECT   31   25                                                            
CONECT   32    5   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47                                                            
CONECT   49    6   50   51                                                  
CONECT   50   49                                                            
CONECT   51   49   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   62                                                       
CONECT   62   61   63                                                       
CONECT   63   62   64                                                       
CONECT   64   63   65                                                       
CONECT   65   64   66                                                       
CONECT   66   65   67                                                       
CONECT   67   66                                                            
MASTER        0    0    0    0    0    0    0    0   67    0  136    0
END
Download

3D PDB for #<Metabolite:0x0000555bb35dd220>

COMPND    HMDB0006971
HETATM    1  C1  UNL     1      -3.468  -3.032   1.642  1.00  0.00           C  
HETATM    2  C2  UNL     1      -2.082  -3.567   1.729  1.00  0.00           C  
HETATM    3  C3  UNL     1      -1.657  -4.152   3.029  1.00  0.00           C  
HETATM    4  C4  UNL     1      -1.641  -3.274   4.232  1.00  0.00           C  
HETATM    5  C5  UNL     1      -2.969  -2.680   4.614  1.00  0.00           C  
HETATM    6  C6  UNL     1      -2.845  -1.911   5.947  1.00  0.00           C  
HETATM    7  C7  UNL     1      -4.162  -1.429   6.371  1.00  0.00           C  
HETATM    8  C8  UNL     1      -4.900  -0.372   5.661  1.00  0.00           C  
HETATM    9  C9  UNL     1      -5.081  -0.511   4.234  1.00  0.00           C  
HETATM   10  C10 UNL     1      -4.795   0.451   3.332  1.00  0.00           C  
HETATM   11  C11 UNL     1      -4.288   1.738   3.677  1.00  0.00           C  
HETATM   12  C12 UNL     1      -3.046   2.375   3.240  1.00  0.00           C  
HETATM   13  C13 UNL     1      -2.845   2.707   1.816  1.00  0.00           C  
HETATM   14  C14 UNL     1      -2.620   1.610   0.868  1.00  0.00           C  
HETATM   15  C15 UNL     1      -1.288   0.919   1.197  1.00  0.00           C  
HETATM   16  C16 UNL     1      -0.967  -0.154   0.199  1.00  0.00           C  
HETATM   17  C17 UNL     1       0.385  -0.733   0.585  1.00  0.00           C  
HETATM   18  C18 UNL     1       1.401   0.342   0.468  1.00  0.00           C  
HETATM   19  O1  UNL     1       1.198   1.369  -0.197  1.00  0.00           O  
HETATM   20  O2  UNL     1       2.632   0.240   1.109  1.00  0.00           O  
HETATM   21  C19 UNL     1       3.617   1.202   1.046  1.00  0.00           C  
HETATM   22  C20 UNL     1       4.969   0.839   0.612  1.00  0.00           C  
HETATM   23  O3  UNL     1       5.082   0.410  -0.741  1.00  0.00           O  
HETATM   24  C21 UNL     1       6.352   0.066  -1.150  1.00  0.00           C  
HETATM   25  O4  UNL     1       7.319   0.109  -0.356  1.00  0.00           O  
HETATM   26  C22 UNL     1       6.599  -0.359  -2.555  1.00  0.00           C  
HETATM   27  C23 UNL     1       6.726  -1.829  -2.652  1.00  0.00           C  
HETATM   28  C24 UNL     1       7.004  -2.438  -3.953  1.00  0.00           C  
HETATM   29  C25 UNL     1       6.154  -2.544  -5.104  1.00  0.00           C  
HETATM   30  C26 UNL     1       5.437  -1.518  -5.830  1.00  0.00           C  
HETATM   31  C27 UNL     1       4.306  -0.740  -5.334  1.00  0.00           C  
HETATM   32  C28 UNL     1       3.058  -1.454  -4.959  1.00  0.00           C  
HETATM   33  C29 UNL     1       3.094  -2.478  -3.898  1.00  0.00           C  
HETATM   34  C30 UNL     1       1.628  -2.982  -3.748  1.00  0.00           C  
HETATM   35  C31 UNL     1       1.631  -4.104  -2.721  1.00  0.00           C  
HETATM   36  C32 UNL     1       0.256  -4.662  -2.485  1.00  0.00           C  
HETATM   37  C33 UNL     1       0.364  -5.801  -1.517  1.00  0.00           C  
HETATM   38  C34 UNL     1       0.960  -5.412  -0.191  1.00  0.00           C  
HETATM   39  C35 UNL     1       0.998  -6.689   0.648  1.00  0.00           C  
HETATM   40  C36 UNL     1       1.597  -6.427   2.007  1.00  0.00           C  
HETATM   41  C37 UNL     1       3.664   2.046   2.354  1.00  0.00           C  
HETATM   42  O5  UNL     1       2.424   2.678   2.477  1.00  0.00           O  
HETATM   43  P1  UNL     1       2.279   3.667   3.805  1.00  0.00           P  
HETATM   44  O6  UNL     1       0.902   3.465   4.421  1.00  0.00           O  
HETATM   45  O7  UNL     1       3.440   3.360   5.003  1.00  0.00           O  
HETATM   46  O8  UNL     1       2.364   5.308   3.343  1.00  0.00           O  
HETATM   47  P2  UNL     1       0.986   5.794   2.530  1.00  0.00           P  
HETATM   48  O9  UNL     1       1.144   7.250   2.096  1.00  0.00           O  
HETATM   49  O10 UNL     1      -0.404   5.728   3.484  1.00  0.00           O  
HETATM   50  O11 UNL     1       0.801   4.829   1.127  1.00  0.00           O  
HETATM   51  C38 UNL     1       0.494   5.644   0.036  1.00  0.00           C  
HETATM   52  C39 UNL     1       0.318   4.916  -1.252  1.00  0.00           C  
HETATM   53  O12 UNL     1      -0.688   3.981  -1.290  1.00  0.00           O  
HETATM   54  C40 UNL     1      -1.046   3.968  -2.666  1.00  0.00           C  
HETATM   55  N1  UNL     1      -2.042   3.041  -3.012  1.00  0.00           N  
HETATM   56  C41 UNL     1      -1.637   1.743  -3.151  1.00  0.00           C  
HETATM   57  C42 UNL     1      -2.503   0.722  -3.486  1.00  0.00           C  
HETATM   58  C43 UNL     1      -3.841   1.005  -3.694  1.00  0.00           C  
HETATM   59  N2  UNL     1      -4.794  -0.004  -4.037  1.00  0.00           N  
HETATM   60  N3  UNL     1      -4.220   2.290  -3.552  1.00  0.00           N  
HETATM   61  C44 UNL     1      -3.342   3.258  -3.225  1.00  0.00           C  
HETATM   62  O13 UNL     1      -3.796   4.401  -3.123  1.00  0.00           O  
HETATM   63  C45 UNL     1      -1.298   5.415  -2.856  1.00  0.00           C  
HETATM   64  O14 UNL     1      -2.183   5.989  -1.938  1.00  0.00           O  
HETATM   65  C46 UNL     1       0.080   5.934  -2.361  1.00  0.00           C  
HETATM   66  O15 UNL     1      -0.031   7.230  -1.892  1.00  0.00           O  
HETATM   67  H1  UNL     1      -4.139  -3.464   2.403  1.00  0.00           H  
HETATM   68  H2  UNL     1      -3.945  -3.352   0.653  1.00  0.00           H  
HETATM   69  H3  UNL     1      -3.536  -1.920   1.580  1.00  0.00           H  
HETATM   70  H4  UNL     1      -1.327  -2.819   1.374  1.00  0.00           H  
HETATM   71  H5  UNL     1      -1.986  -4.398   0.941  1.00  0.00           H  
HETATM   72  H6  UNL     1      -2.307  -5.059   3.266  1.00  0.00           H  
HETATM   73  H7  UNL     1      -0.609  -4.589   2.955  1.00  0.00           H  
HETATM   74  H8  UNL     1      -1.260  -3.877   5.105  1.00  0.00           H  
HETATM   75  H9  UNL     1      -0.886  -2.455   4.134  1.00  0.00           H  
HETATM   76  H10 UNL     1      -3.176  -1.873   3.861  1.00  0.00           H  
HETATM   77  H11 UNL     1      -3.746  -3.439   4.708  1.00  0.00           H  
HETATM   78  H12 UNL     1      -2.105  -1.076   5.824  1.00  0.00           H  
HETATM   79  H13 UNL     1      -2.429  -2.579   6.719  1.00  0.00           H  
HETATM   80  H14 UNL     1      -4.818  -2.377   6.466  1.00  0.00           H  
HETATM   81  H15 UNL     1      -4.061  -1.141   7.490  1.00  0.00           H  
HETATM   82  H16 UNL     1      -5.945  -0.327   6.157  1.00  0.00           H  
HETATM   83  H17 UNL     1      -4.414   0.626   5.883  1.00  0.00           H  
HETATM   84  H18 UNL     1      -5.494  -1.468   3.841  1.00  0.00           H  
HETATM   85  H19 UNL     1      -4.997   0.174   2.314  1.00  0.00           H  
HETATM   86  H20 UNL     1      -5.113   2.521   3.242  1.00  0.00           H  
HETATM   87  H21 UNL     1      -4.382   1.995   4.803  1.00  0.00           H  
HETATM   88  H22 UNL     1      -2.862   3.352   3.830  1.00  0.00           H  
HETATM   89  H23 UNL     1      -2.132   1.770   3.606  1.00  0.00           H  
HETATM   90  H24 UNL     1      -1.969   3.425   1.716  1.00  0.00           H  
HETATM   91  H25 UNL     1      -3.711   3.326   1.420  1.00  0.00           H  
HETATM   92  H26 UNL     1      -3.365   0.827   0.859  1.00  0.00           H  
HETATM   93  H27 UNL     1      -2.496   1.988  -0.196  1.00  0.00           H  
HETATM   94  H28 UNL     1      -1.339   0.493   2.230  1.00  0.00           H  
HETATM   95  H29 UNL     1      -0.535   1.688   1.189  1.00  0.00           H  
HETATM   96  H30 UNL     1      -0.806   0.277  -0.822  1.00  0.00           H  
HETATM   97  H31 UNL     1      -1.755  -0.897   0.082  1.00  0.00           H  
HETATM   98  H32 UNL     1       0.617  -1.576  -0.102  1.00  0.00           H  
HETATM   99  H33 UNL     1       0.301  -1.119   1.607  1.00  0.00           H  
HETATM  100  H34 UNL     1       3.224   1.968   0.267  1.00  0.00           H  
HETATM  101  H35 UNL     1       5.609   1.769   0.667  1.00  0.00           H  
HETATM  102  H36 UNL     1       5.441   0.028   1.234  1.00  0.00           H  
HETATM  103  H37 UNL     1       7.644   0.044  -2.859  1.00  0.00           H  
HETATM  104  H38 UNL     1       5.904   0.171  -3.167  1.00  0.00           H  
HETATM  105  H39 UNL     1       5.830  -2.330  -2.167  1.00  0.00           H  
HETATM  106  H40 UNL     1       7.556  -2.119  -1.920  1.00  0.00           H  
HETATM  107  H41 UNL     1       8.065  -2.080  -4.306  1.00  0.00           H  
HETATM  108  H42 UNL     1       7.320  -3.543  -3.693  1.00  0.00           H  
HETATM  109  H43 UNL     1       6.931  -2.931  -5.963  1.00  0.00           H  
HETATM  110  H44 UNL     1       5.579  -3.551  -5.084  1.00  0.00           H  
HETATM  111  H45 UNL     1       5.086  -1.929  -6.869  1.00  0.00           H  
HETATM  112  H46 UNL     1       6.223  -0.762  -6.211  1.00  0.00           H  
HETATM  113  H47 UNL     1       3.998  -0.088  -6.275  1.00  0.00           H  
HETATM  114  H48 UNL     1       4.464   0.060  -4.608  1.00  0.00           H  
HETATM  115  H49 UNL     1       2.302  -0.662  -4.626  1.00  0.00           H  
HETATM  116  H50 UNL     1       2.563  -1.842  -5.906  1.00  0.00           H  
HETATM  117  H51 UNL     1       3.706  -3.364  -4.039  1.00  0.00           H  
HETATM  118  H52 UNL     1       3.408  -2.048  -2.901  1.00  0.00           H  
HETATM  119  H53 UNL     1       1.050  -2.122  -3.369  1.00  0.00           H  
HETATM  120  H54 UNL     1       1.245  -3.284  -4.723  1.00  0.00           H  
HETATM  121  H55 UNL     1       2.305  -4.886  -3.067  1.00  0.00           H  
HETATM  122  H56 UNL     1       1.967  -3.624  -1.776  1.00  0.00           H  
HETATM  123  H57 UNL     1      -0.221  -5.011  -3.413  1.00  0.00           H  
HETATM  124  H58 UNL     1      -0.414  -3.875  -2.023  1.00  0.00           H  
HETATM  125  H59 UNL     1      -0.643  -6.259  -1.383  1.00  0.00           H  
HETATM  126  H60 UNL     1       1.053  -6.572  -1.973  1.00  0.00           H  
HETATM  127  H61 UNL     1       0.314  -4.647   0.290  1.00  0.00           H  
HETATM  128  H62 UNL     1       2.004  -5.040  -0.329  1.00  0.00           H  
HETATM  129  H63 UNL     1       1.567  -7.455   0.076  1.00  0.00           H  
HETATM  130  H64 UNL     1      -0.064  -6.998   0.768  1.00  0.00           H  
HETATM  131  H65 UNL     1       2.680  -6.696   1.937  1.00  0.00           H  
HETATM  132  H66 UNL     1       1.166  -7.112   2.769  1.00  0.00           H  
HETATM  133  H67 UNL     1       1.541  -5.359   2.300  1.00  0.00           H  
HETATM  134  H68 UNL     1       3.758   1.327   3.182  1.00  0.00           H  
HETATM  135  H69 UNL     1       4.518   2.727   2.357  1.00  0.00           H  
HETATM  136  H70 UNL     1       4.180   4.046   4.994  1.00  0.00           H  
HETATM  137  H71 UNL     1      -0.803   4.822   3.524  1.00  0.00           H  
HETATM  138  H72 UNL     1      -0.370   6.315   0.264  1.00  0.00           H  
HETATM  139  H73 UNL     1       1.381   6.327  -0.094  1.00  0.00           H  
HETATM  140  H74 UNL     1       1.259   4.388  -1.518  1.00  0.00           H  
HETATM  141  H75 UNL     1      -0.057   3.750  -3.165  1.00  0.00           H  
HETATM  142  H76 UNL     1      -0.583   1.483  -2.996  1.00  0.00           H  
HETATM  143  H77 UNL     1      -2.184  -0.305  -3.596  1.00  0.00           H  
HETATM  144  H78 UNL     1      -5.287  -0.556  -3.319  1.00  0.00           H  
HETATM  145  H79 UNL     1      -5.008  -0.197  -5.055  1.00  0.00           H  
HETATM  146  H80 UNL     1      -1.399   5.760  -3.879  1.00  0.00           H  
HETATM  147  H81 UNL     1      -2.126   5.427  -1.127  1.00  0.00           H  
HETATM  148  H82 UNL     1       0.822   5.840  -3.173  1.00  0.00           H  
HETATM  149  H83 UNL     1      -0.953   7.581  -2.092  1.00  0.00           H  
CONECT    1    2   67   68   69
CONECT    2    3   70   71
CONECT    3    4   72   73
CONECT    4    5   74   75
CONECT    5    6   76   77
CONECT    6    7   78   79
CONECT    7    8   80   81
CONECT    8    9   82   83
CONECT    9   10   10   84
CONECT   10   11   85
CONECT   11   12   86   87
CONECT   12   13   88   89
CONECT   13   14   90   91
CONECT   14   15   92   93
CONECT   15   16   94   95
CONECT   16   17   96   97
CONECT   17   18   98   99
CONECT   18   19   19   20
CONECT   20   21
CONECT   21   22   41  100
CONECT   22   23  101  102
CONECT   23   24
CONECT   24   25   25   26
CONECT   26   27  103  104
CONECT   27   28  105  106
CONECT   28   29  107  108
CONECT   29   30  109  110
CONECT   30   31  111  112
CONECT   31   32  113  114
CONECT   32   33  115  116
CONECT   33   34  117  118
CONECT   34   35  119  120
CONECT   35   36  121  122
CONECT   36   37  123  124
CONECT   37   38  125  126
CONECT   38   39  127  128
CONECT   39   40  129  130
CONECT   40  131  132  133
CONECT   41   42  134  135
CONECT   42   43
CONECT   43   44   44   45   46
CONECT   45  136
CONECT   46   47
CONECT   47   48   48   49   50
CONECT   49  137
CONECT   50   51
CONECT   51   52  138  139
CONECT   52   53   65  140
CONECT   53   54
CONECT   54   55   63  141
CONECT   55   56   61
CONECT   56   57   57  142
CONECT   57   58  143
CONECT   58   59   60   60
CONECT   59  144  145
CONECT   60   61
CONECT   61   62   62
CONECT   63   64   65  146
CONECT   64  147
CONECT   65   66  148
CONECT   66  149
END
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SMILES for #<Metabolite:0x0000555bb35dd220>

[H][C@@](COC(=O)CCCCCCCCCCCCCCC)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H](C(O)[C@H]1O)N1C=CC(N)=NC1=O)OC(=O)CCCCCCC\C=C/CCCCCCCC
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INCHI for #<Metabolite:0x0000555bb35dd220>

InChI=1S/C46H83N3O15P2/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-42(51)62-38(35-59-41(50)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2)36-60-65(55,56)64-66(57,58)61-37-39-43(52)44(53)45(63-39)49-34-33-40(47)48-46(49)54/h17-18,33-34,38-39,43-45,52-53H,3-16,19-32,35-37H2,1-2H3,(H,55,56)(H,57,58)(H2,47,48,54)/b18-17-/t38-,39-,43+,44?,45-/m1/s1
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Synonyms
ValueSource
1-Hexadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-CDPHMDB
1-Palmitoyl-2-oleoyl-sn-glycero-3-cytidine-5'-diphosphateHMDB
CDP-DG(16:0/18:1)HMDB
CDP-DG(16:0/18:1N9)HMDB
CDP-DG(16:0/18:1W9)HMDB
CDP-DG(34:1)HMDB
CDP-Diacylglycerol(16:0/18:1)HMDB
CDP-Diacylglycerol(16:0/18:1N9)HMDB
CDP-Diacylglycerol(16:0/18:1W9)HMDB
CDP-Diacylglycerol(34:1)HMDB
Molecular FormulaC46H83N3O15P2
Average Mass980.124
Monoisotopic Mass979.529942981
IUPAC Name{[(2R,3R,5R)-5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}({[(2R)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propoxy](hydroxy)phosphoryl}oxy)phosphinic acid
Traditional Name[(2R,3R,5R)-5-(4-amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy([(2R)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propoxy(hydroxy)phosphoryl]oxy)phosphinic acid
CAS Registry NumberNot Available
SMILES
[H][C@@](COC(=O)CCCCCCCCCCCCCCC)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H](C(O)[C@H]1O)N1C=CC(N)=NC1=O)OC(=O)CCCCCCC\C=C/CCCCCCCC
InChI Identifier
InChI=1S/C46H83N3O15P2/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-42(51)62-38(35-59-41(50)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2)36-60-65(55,56)64-66(57,58)61-37-39-43(52)44(53)45(63-39)49-34-33-40(47)48-46(49)54/h17-18,33-34,38-39,43-45,52-53H,3-16,19-32,35-37H2,1-2H3,(H,55,56)(H,57,58)(H2,47,48,54)/b18-17-/t38-,39-,43+,44?,45-/m1/s1
InChI KeyFPQIENQTTUVFMM-BLPYJZGISA-N