| MMDBm0000194 | Klebsiella aerogenes KCTC 2190 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000431 | Streptococcus oralis | Eubacteria | Firmicutes | Human | Microbial culture | Not Available |
| MMDBm0000712 | Acidovorax delafieldii | Eubacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0000750 | Actinobacillus succinogenes | Eubacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000768 | Acidovorax avenae | Eubacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000840 | Streptococcus lutetiensis | Eubacteria | Firmicutes | Human | Microbial culture | Not Available |
| MMDBm0000864 | Clostridium saccharobutylicum | Eubacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000931 | Emticicia oligotrophica | Eubacteria | Bacteroidetes | Not Available | Microbial culture | Not Available |
| MMDBm0001052 | Clostridium saccharoperbutylacetonicum | Eubacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0001066 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0001067 | Klebsiella variicola | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001086 | Streptococcus pasteurianus | Eubacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0001155 | Lachnospiraceae bacterium 5_1_57FAA | Eubacteria | Firmicutes | Not Available | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001450 | Citrobacter koseri ATCC BAA-895 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001529 | Delftia acidovorans SPH-1 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001596 | Escherichia fergusonii ATCC 35469 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001727 | Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0002190 | Vibrio furnissii NCTC 11218 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002429 | Ralstonia solanacearum GMI1000 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002785 | Yersinia pseudotuberculosis YPIII | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0483496 | Burkholderia cepacia GG4 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0491302 | Lautropia mirabilis ATCC 51599 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0533363 | Cedecea davisae DSM 4568 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0534800 | Enterobacter hormaechei YT2 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0534801 | Enterobacter hormaechei YT3 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
