MiMeDB: Escherichia coli (MMDBm0000160)

Microbe Identification

Microbe name

Escherichia coli

NCBI Taxonomy ID

562

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Proteobacteria

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Species

coli

Microbe Properties

Gram staining properties

Positive

Shape

Bacilli

Mobility

Yes

Flagellar presence

Yes

Number of membranes

Oxygen preference

Facultative anaerobe

Optimal temperature

Temperature range

Mesophilic

Habitat

HostAssociated

Biotic relationship

Free living

Cell arrangement

Pairs - Singles

Sporulation

Pairs - Singles

Metabolism

Not Available

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human			Not Available	Human Oral Microbiome Database (HOMD)	20624719
Human	Gut	Feces	Not Available	GutFeeling KnowledgeBase	31509535
Human	Large intestine	Feces; Pleural fluid plaque; BAL	Not Available	BacDive	PMID: 34718743
Human	Lower respiratory tract	Feces; Pleural fluid plaque; BAL	Not Available	BacDive	PMID: 34718743
Human		Stool	Not Available	Human Microbiome Project	28953883
Human	Large intestine		Not Available	BacDive	34718743
Human	Lung		Not Available	BacDive	34718743
Human	Lower respiratory tract		Not Available	BacDive	34718743
Human	Bronchi		Not Available	BacDive	34718743
Human	Fornix		Not Available	BacDive	34718743
Human	Vagina		Not Available	BacDive	34718743
Human	Duodenum		Not Available	Disbiome	25865706
Human	Large intestine	Feces	Not Available	Disbiome	29782468

Health Effects

Host	Related Health Condition	Microbal response/effect	Data Source	Reference
Human	Diarrhea		BacDive
Human	Uremia		BacDive
Human	Irritable bowel syndrome	Elevated	Disbiome	25865706
Human	Amyotrophic lateral sclerosis	Elevated	Disbiome	29782468
Human	Asthma	Elevated	Disbiome	29479926
Human	Atherosclerosis	Elevated	Disbiome	29018189
Human	Autism	Reduced	Disbiome	24130822
Human	Chronic kidney disease	Reduced	Disbiome	28588309
Human	Chronic kidney disease	Elevated	Disbiome	32183306
Human	Colorectal cancer	Elevated	Disbiome	31530647
Human	Crohn's disease	Elevated	Disbiome	22529960
Human	Cystic fibrosis	Elevated	Disbiome	23613805
Human	Cystic fibrosis	Elevated	Disbiome	24178246
Human	Cystic fibrosis	Elevated	Disbiome	27810876
Human	Irritable bowel syndrome	Elevated	Disbiome	27895859
Human	Ulcerative colitis	Elevated	Disbiome	28039159
Human	Clostridium Difficile Infection	Elevated	Disbiome	32296918

Related Metabolites

Metabolic Reactions

Reactions

This table shows at most 10 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0018026	2,3-Dihydro-2,3-dihydroxybenzoic acid	2,3-dihydroxybenzoic acid	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase	Dehydrogenation	PathBank	31602464
MMDBr0018027	Nitrate	Nitrite	Respiratory nitrate reductase 1 alpha chain	Reduction	PathBank	31602464
MMDBr0018028	Nitrite	Ammonia	Nitrite reductase (NADH) large subunit	Reduction	PathBank	31602464
MMDBr0018029	Nitrite	Ferricytochrome c	Cytochrome c-552	Not Available	PathBank	31602464
MMDBr0018030	Carbon dioxide	Hydrogen carbonate	Carbonic anhydrase 1	Carbonate dehydration (or hydration of CO2)	PathBank	31602464
MMDBr0018031	Hydrogen carbonate	Carbamic acid	Cyanate hydratase	Hydration/dehydration of C-O bond	PathBank	31602464
MMDBr0018032	Carbon dioxide	Carbamic acid	Carbamate kinase	Phosphorylation	PathBank	31602464
MMDBr0018033	Isochorismate	2,3-Dihydro-2,3-dihydroxybenzoic acid	Enterobactin synthase component B	Synthesis	PathBank	31602464
MMDBr0018034	2,3-Dihydro-2,3-dihydroxybenzoic acid	2,3-dihydroxybenzoic acid	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase	Dehydrogenation	PathBank	31602464
MMDBr0018035	S-Adenosylmethionine	S-Adenosylhomocysteine	Malonyl-[acyl-carrier protein] O-methyltransferase	Methylation	PathBank	31602464

Genome Data

Genome Link

MMDBm0000160

Genome Length

5182764 bp

# Predicted Proteins

5179

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-31 16:10:25 UTC

Reference

PMID: 17704766

Source Links

GenBank

NZ_HG941718

MiMeDB ID	Organism	Strain	Serotype	Variant	NCBI Taxonomy	BaSyS2 Genome
MMDBm0000161	Escherichia coli 1303	1303	-	-	745156	View
MMDBm0000162	Escherichia coli CFT073	CFT073	-	-	199310	View
MMDBm0000163	Escherichia coli LF82	LF82	-	-	591946	View
MMDBm0000164	Escherichia coli O104:H4 str. 2009EL-2050	2009EL-2050	O104:H4	-	1134782	View
MMDBm0000165	Escherichia coli P12b	P12b	-	-	910348	View
MMDBm0000166	Escherichia coli SE15	SE15	-	-	431946	View
MMDBm0000167	Escherichia coli SMS-3-5	SMS-3-5	-	-	439855	View
MMDBm0000168	Escherichia coli UMNK88	UMNK88	-	-	696406	View
MMDBm0000169	Escherichia coli UTI89	UTI89	-	-	364106	View
MMDBm0001583	Escherichia coli str. K-12 substr. MG1655	K-12 substr. MG1655	-	-	511145	View
MMDBm0001584	Escherichia coli O157:H7 str. Sakai	Sakai	O157:H7	-	386585	View
MMDBm0001585	Escherichia coli O157:H7 str. EDL933	EDL933	O157:H7	-	155864	View
MMDBm0001586	Escherichia coli 536	536	-	-	362663	View
MMDBm0001587	Escherichia coli APEC O1	APEC O1	-	-	405955	View
MMDBm0001588	Escherichia coli E24377A	E24377A	-	-	331111	View
MMDBm0001589	Escherichia coli HS	HS	-	-	331112	View
MMDBm0001590	Escherichia coli ATCC 8739	ATCC 8739	-	-	481805	View
MMDBm0001591	Escherichia coli str. K-12 substr. DH10B	K-12 substr. DH10B	-	-	316385	View
MMDBm0001592	Escherichia coli O157:H7 str. EC4115	EC4115	O157:H7	-	444450	View
MMDBm0001593	Escherichia coli SE11	SE11	-	-	409438	View
MMDBm0001594	Escherichia coli O127:H6 str. E2348/69	E2348/69	O127:H6	-	574521	View
MMDBm0001595	Escherichia coli UMN026	UMN026	-	-	585056	View
MMDBm0001597	Escherichia coli IAI1	IAI1	-	-	585034	View
MMDBm0001598	Escherichia coli S88	S88	-	-	585035	View
MMDBm0001599	Escherichia coli ED1a	ED1a	-	-	585397	View
MMDBm0001600	Escherichia coli 55989	55989	-	-	585055	View
MMDBm0001601	Escherichia coli IAI39	IAI39	-	-	585057	View
MMDBm0001602	Escherichia coli BW2952	BW2952	-	-	595496	View
MMDBm0001604	Escherichia coli O157:H7 str. TW14359	TW14359	O157:H7	-	544404	View
MMDBm0001605	Escherichia coli O103:H2 str. 12009	12009	O103:H2	-	585395	View
MMDBm0001606	Escherichia coli O26:H11 str. 11368	11368	O26:H11	-	573235	View
MMDBm0001607	Escherichia coli O111:H- str. 11128	11128	O111:H-	-	585396	View
MMDBm0001608	Escherichia coli O55:H7 str. CB9615	CB9615	O55:H7	-	701177	View
MMDBm0002013	Escherichia coli 'BL21-Gold(DE3)pLysS AG'	BL21-Gold(DE3)pLysS AG	-	-	866768	View
MMDBm0002103	Escherichia coli 042	42	-	-	216592	View
MMDBm0002104	Escherichia coli W	W	-	-	566546	View
MMDBm0002156	Escherichia coli IHE3034	IHE3034	-	-	714962	View
MMDBm0002209	Escherichia coli BL21(DE3)	BL21(DE3)	-	-	469008	View
MMDBm0002280	Escherichia coli DH1	DH1	-	-	536056	View
MMDBm0002286	Escherichia coli KO11FL	KO11FL	-	-	595495	View
MMDBm0541555	Escherichia coli K-12	K-12	-	-	83333	View
MMDBm0541923	Escherichia coli MS 115-1	MS 115-1	-	-	749537	View
MMDBm0541939	Escherichia coli MS 21-1	MS 21-1	-	-	749527	View
MMDBm0542056	Escherichia coli O104:H4 str. 2009EL-2071	2009EL-2071	O104:H4	-	1133853	View
MMDBm0542176	Escherichia coli O111:H-	H-	-	-	168927	View
MMDBm0542361	Escherichia coli O145:H28 str. RM12581	RM12581	O145:H28	-	1248823	View
MMDBm0542442	Escherichia coli O157:H7	H7	-	-	83334	View