| MMDBm0000045 | Bacteroides fragilis 638R | Eubacteria | Bacteroidetes | Human Feces | Not Available | RHEA |
| MMDBm0000046 | Bacteroides fragilis NCTC 9343 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000047 | Bacteroides fragilis YCH46 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000048 | Bacteroides helcogenes P 36-108 | Eubacteria | Bacteroidetes | Pig | Not Available | RHEA |
| MMDBm0000055 | Bacteroides thetaiotaomicron VPI-5482 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0001230 | Anoxybacillus flavithermus WK1 | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0001231 | Aquifex aeolicus VF5 | Eubacteria | Aquificae | Not Available | Not Available | RHEA |
| MMDBm0001322 | Buchnera aphidicola str. APS (Acyrthosiphon pisum) | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001323 | Buchnera aphidicola str. Sg (Schizaphis graminum) | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001324 | Buchnera aphidicola str. Bp (Baizongia pistaciae) | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001485 | Corynebacterium glutamicum ATCC 13032 | Eubacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0001547 | Desulfovibrio vulgaris str. Hildenborough | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001658 | Haemophilus influenzae Rd KW20 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001685 | Helicobacter pylori 26695 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001686 | Helicobacter pylori J99 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001818 | Methanocaldococcus jannaschii DSM 2661 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001880 | Mycobacterium tuberculosis H37Rv | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0001881 | Mycobacterium leprae TN | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0001882 | Mycobacterium tuberculosis CDC1551 | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0001884 | Mycobacterium bovis AF2122/97 | Eubacteria | Actinobacteria | Cattle | Not Available | RHEA |
| MMDBm0001968 | Geobacter sulfurreducens PCA | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002492 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002567 | Staphylococcus aureus subsp. aureus NCTC 8325 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002635 | Streptomyces coelicolor A3(2) | Eubacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0002663 | Synechococcus elongatus PCC 7942 | Eubacteria | Cyanobacteria | Not Available | Not Available | RHEA |
