| MMDBm0000003 | Acidaminococcus fermentans DSM 20731 | Eubacteria | Firmicutes | Pig | Metabolic reconstruction | VMH |
| MMDBm0000004 | Acidaminococcus intestini RyC-MR95 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000185 | Fusobacterium nucleatum subsp. nucleatum ATCC 25586 | Eubacteria | Fusobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001136 | Ruminococcaceae bacterium D16 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001188 | Acinetobacter baumannii AB0057 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001529 | Delftia acidovorans SPH-1 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001810 | Mesorhizobium loti MAFF303099 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002164 | Acinetobacter calcoaceticus PHEA-2 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002403 | Pseudomonas putida F1 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416185 | Fusobacterium gonidiaformans 3-1-5R | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416186 | Fusobacterium gonidiaformans ATCC 25563 | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416194 | Fusobacterium mortiferum ATCC 9817 | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416200 | Fusobacterium necrophorum D12 | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416223 | Fusobacterium nucleatum subsp. animalis 3_1_33 | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416224 | Fusobacterium nucleatum subsp. animalis 4_8 | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416225 | Fusobacterium nucleatum subsp. animalis 7_1 | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416228 | Fusobacterium nucleatum subsp. animalis D11 | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416237 | Fusobacterium nucleatum subsp. vincentii 3_1_27 | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416238 | Fusobacterium nucleatum subsp. vincentii 3_1_36A2 | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416239 | Fusobacterium nucleatum subsp. vincentii 4_1_13 | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416251 | Fusobacterium periodonticum 1_1_41FAA | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416252 | Fusobacterium periodonticum 2_1_31 | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416256 | Fusobacterium russii ATCC 25533 | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416260 | Fusobacterium ulcerans ATCC 49185 | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416261 | Fusobacterium varium ATCC 27725 | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
