MiMeDB: Showing metabocard for 5-Carboxy-2-oxohept-3-enedioate (MMDBc0048238)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2022-04-29 21:54:29 UTC

Update Date

2025-10-07 16:08:11 UTC

Metabolite ID

MMDBc0048238

Metabolite Identification

Common Name

5-Carboxy-2-oxohept-3-enedioate

Description

5-Carboxy-2-oxohept-3-enedioate is a dicarboxylic acid derivative. There is limited literature available on this metabolite, indicating a need for further research to understand its biological significance and potential applications.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652304292223542D          

 16 15  0  0  0  0            999 V2000
    2.6664   -2.3645    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520   -1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375   -2.3645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375   -3.1895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520   -3.6020    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230   -3.6020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230   -4.4270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914   -3.1895    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520   -1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    0.5230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    0.5230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809   -1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  4  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  2  0  0  0  0
  2  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  2  0  0  0  0
  9 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  2  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0048238

> <DATABASE_NAME>
MIME

> <SMILES>
[H]C(=CC(=O)C(O)=O)C(CC(O)=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C8H8O7/c9-5(8(14)15)2-1-4(7(12)13)3-6(10)11/h1-2,4H,3H2,(H,10,11)(H,12,13)(H,14,15)

> <INCHI_KEY>
WHGVLEMQINVDLH-UHFFFAOYSA-N

> <FORMULA>
C8H8O7

> <MOLECULAR_WEIGHT>
216.145

> <EXACT_MASS>
216.027002598

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
23

> <JCHEM_AVERAGE_POLARIZABILITY>
18.321111932123685

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-oxopent-3-ene-1,2,5-tricarboxylic acid

> <ALOGPS_LOGP>
-0.20

> <JCHEM_LOGP>
0.0004420333333330917

> <ALOGPS_LOGS>
-2.13

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-3

> <JCHEM_PKA>
3.6836228920959035

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.5976778222579195

> <JCHEM_POLAR_SURFACE_AREA>
128.97

> <JCHEM_REFRACTIVITY>
45.418200000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.59e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-oxopent-3-ene-1,2,5-tricarboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  H   UNK     0       4.977  -4.414   0.000  0.00  0.00           H+0
HETATM    2  C   UNK     0       3.644  -3.644   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.310  -4.414   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.310  -5.954   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       3.644  -6.724   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       0.976  -6.724   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       0.976  -8.264   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0      -0.357  -5.954   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       3.644  -2.104   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.310  -1.334   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.310   0.206   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       0.976   0.976   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       3.644   0.976   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       4.977  -1.334   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       4.977   0.206   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0       6.311  -2.104   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    9                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9    2   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    9   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   30    0
END

Synonyms

Value	Source
5-Carboxy-2-oxohept-3-enedioate	ChEBI
5-Oxopent-3-ene-1,2,5-tricarboxylate	ChEBI
5-Carboxy-2-oxohept-3-enedioic acid	Generator

Molecular Formula

C₈H₈O₇

Average Mass

216.145

Monoisotopic Mass

216.027002598

IUPAC Name

5-oxopent-3-ene-1,2,5-tricarboxylic acid

Traditional Name

5-oxopent-3-ene-1,2,5-tricarboxylic acid

CAS Registry Number

Not Available

SMILES

[H]C(=CC(=O)C(O)=O)C(CC(O)=O)C(O)=O

InChI Identifier

InChI=1S/C8H8O7/c9-5(8(14)15)2-1-4(7(12)13)3-6(10)11/h1-2,4H,3H2,(H,10,11)(H,12,13)(H,14,15)

InChI Key

WHGVLEMQINVDLH-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Tricarboxylic acids and derivatives

Direct Parent

Tricarboxylic acids and derivatives

Alternative Parents

Substituents

Tricarboxylic acid or derivatives
Keto acid
Alpha-keto acid
Alpha,beta-unsaturated ketone
Enone
Alpha-hydroxy ketone
Acryloyl-group
Ketone
Carboxylic acid
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

tricarboxylic acid (CHEBI:15924 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	1.59 g/L	ALOGPS
logP	-0.2	ALOGPS
logP	0.00044	ChemAxon
logS	-2.1	ALOGPS
pKa (Strongest Acidic)	2.6	ChemAxon
Physiological Charge	-3	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	128.97 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	45.42 m³·mol⁻¹	ChemAxon
Polarizability	18.32 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_2) - 70eV, Positive	Not Available	2022-08-08	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-09	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-09	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-24	362.9
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-24	187.1
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-24	104.0
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-24	286.7
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-24	259.4
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (void)	2025-10-24	314.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	999.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-24	385.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-24	1022.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	165.9
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-24	241.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	176.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (void)	2025-10-24	60.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-24	417.4
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-24	783.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-24	63.5
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-24	213.3
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-24	991.2
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-24	641.5

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	5-Carboxy-2-oxohept-3-enedioate_TMS_1	C[Si](C)(C)OC(=O)C(=O)C=CC(CC(=O)O)C(=O)O	standard non polar	2025-10-24	2109.02
Gas Chromatography	5-Carboxy-2-oxohept-3-enedioate_TMS_2	C[Si](C)(C)OC(=O)CC(C=CC(=O)C(=O)O)C(=O)O	standard non polar	2025-10-24	1775.82
Gas Chromatography	5-Carboxy-2-oxohept-3-enedioate_TMS_3	C[Si](C)(C)OC(=O)C(C=CC(=O)C(=O)O)CC(=O)O	standard non polar	2025-10-24	2273.63
Gas Chromatography	5-Carboxy-2-oxohept-3-enedioate_TMS_4	C[Si](C)(C)OC(=O)CC(C=CC(=O)C(=O)O[Si](C)(C)C)C(=O)O	standard non polar	2025-10-24	1885.44
Gas Chromatography	5-Carboxy-2-oxohept-3-enedioate_TMS_5	C[Si](C)(C)OC(=O)C(=O)C=CC(CC(=O)O)C(=O)O[Si](C)(C)C	standard non polar	2025-10-24	1525.94
Gas Chromatography	5-Carboxy-2-oxohept-3-enedioate_TMS_6	C[Si](C)(C)OC(=O)CC(C=CC(=O)C(=O)O)C(=O)O[Si](C)(C)C	standard non polar	2025-10-24	1714.82
Gas Chromatography	5-Carboxy-2-oxohept-3-enedioate_TMS_7	C[Si](C)(C)OC(=O)CC(C=CC(=O)C(=O)O[Si](C)(C)C)C(=O)O[Si](C)(C)C	standard non polar	2025-10-24	1782.03
Gas Chromatography	5-Carboxy-2-oxohept-3-enedioate_TMS_1	C[Si](C)(C)OC(=O)C(=O)C=CC(CC(=O)O)C(=O)O	standard polar	2025-10-24	1599.29
Gas Chromatography	5-Carboxy-2-oxohept-3-enedioate_TMS_2	C[Si](C)(C)OC(=O)CC(C=CC(=O)C(=O)O)C(=O)O	standard polar	2025-10-24	2144.34
Gas Chromatography	5-Carboxy-2-oxohept-3-enedioate_TMS_3	C[Si](C)(C)OC(=O)C(C=CC(=O)C(=O)O)CC(=O)O	standard polar	2025-10-24	2117.95
Gas Chromatography	5-Carboxy-2-oxohept-3-enedioate_TMS_4	C[Si](C)(C)OC(=O)CC(C=CC(=O)C(=O)O[Si](C)(C)C)C(=O)O	standard polar	2025-10-24	2322.74
Gas Chromatography	5-Carboxy-2-oxohept-3-enedioate_TMS_5	C[Si](C)(C)OC(=O)C(=O)C=CC(CC(=O)O)C(=O)O[Si](C)(C)C	standard polar	2025-10-24	2594.2
Gas Chromatography	5-Carboxy-2-oxohept-3-enedioate_TMS_6	C[Si](C)(C)OC(=O)CC(C=CC(=O)C(=O)O)C(=O)O[Si](C)(C)C	standard polar	2025-10-24	1461.29
Gas Chromatography	5-Carboxy-2-oxohept-3-enedioate_TMS_7	C[Si](C)(C)OC(=O)CC(C=CC(=O)C(=O)O[Si](C)(C)C)C(=O)O[Si](C)(C)C	standard polar	2025-10-24	2463.87

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Feces

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Proteobacteria	63	Human feces; Human sputum; Human	Metabolic reconstruction
Bacteria/Eubacteria	Verrucomicrobia	1	Human ; Human feces	Metabolic reconstruction
Bacteria/Eubacteria	Firmicutes	26	Human feces; Human	Metabolic reconstruction
Bacteria/Eubacteria	Actinobacteria	39	Human feces; Human	Metabolic reconstruction
Archaea	Euryarchaeota	1		Metabolic reconstruction
Bacteria	Firmicutes	1	Human feces; Human	Metabolic reconstruction
Bacteria/Eubacteria	Bacteroidetes	5	Human feces	Metabolic reconstruction
Eukaryota/Fungi	Ascomycota	1		Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified									HMDB

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

535

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

550

PDB ID

Not Available

ChEBI ID

15924

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Noronha A, Modamio J, Jarosz Y, Guerard E, Sompairac N, Preciat G, Danielsdottir AD, Krecke M, Merten D, Haraldsdottir HS, Heinken A, Heirendt L, Magnusdottir S, Ravcheev DA, Sahoo S, Gawron P, Friscioni L, Garcia B, Prendergast M, Puente A, Rodrigues M, Roy A, Rouquaya M, Wiltgen L, Zagare A, John E, Krueger M, Kuperstein I, Zinovyev A, Schneider R, Fleming RMT, Thiele I: The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Res. 2019 Jan 8;47(D1):D614-D624. doi: 10.1093/nar/gky992. [PubMed:30371894 ]

Showing metabocard for 5-Carboxy-2-oxohept-3-enedioate (MMDBc0048238)

MOL for #<Metabolite:0x00007fc974878af8>

3D MOL for #<Metabolite:0x00007fc974878af8>

3D SDF for #<Metabolite:0x00007fc974878af8>

3D-SDF for #<Metabolite:0x00007fc974878af8>

PDB for #<Metabolite:0x00007fc974878af8>

3D PDB for #<Metabolite:0x00007fc974878af8>

SMILES for #<Metabolite:0x00007fc974878af8>

INCHI for #<Metabolite:0x00007fc974878af8>

Structure for #<Metabolite:0x00007fc974878af8>

3D Structure for #<Metabolite:0x00007fc974878af8>