| MMDBm0000160 | Escherichia coli | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000332 | Pseudomonas fluorescens | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000368 | Shigella flexneri | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0000763 | Prevotella bryantii | Eubacteria | Bacteroidetes | Human Feces | Not Available | RHEA |
| MMDBm0001066 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001231 | Aquifex aeolicus VF5 | Eubacteria | Aquificae | Not Available | Not Available | RHEA |
| MMDBm0001248 | Bacillus subtilis subsp. subtilis str. 168 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0001359 | Caldicellulosiruptor bescii DSM 6725 | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0001658 | Haemophilus influenzae Rd KW20 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001818 | Methanocaldococcus jannaschii DSM 2661 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001905 | Mycoplasma genitalium G37 | Eubacteria | Tenericutes | Human | Not Available | RHEA |
| MMDBm0001906 | Mycoplasma pneumoniae M129 | Eubacteria | Tenericutes | Human | Not Available | RHEA |
| MMDBm0001952 | Aeropyrum pernix K1 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001954 | Pyrobaculum aerophilum str. IM2 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002073 | Rhizobium sp. NGR234 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002391 | Pseudomonas aeruginosa PAO1 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002392 | Pseudomonas putida KT2440 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002394 | Pseudomonas syringae pv. tomato str. DC3000 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002399 | Pseudomonas aeruginosa UCBPP-PA14 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002492 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002538 | Sinorhizobium meliloti 1021 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002590 | Streptococcus mutans UA159 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002690 | Thermococcus kodakarensis KOD1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002701 | Thermoplasma acidophilum DSM 1728 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
