| MMDBm0000023 | Arcobacter butzleri RM4018 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000026 | Bacillus cereus AH187 (F4810/72) | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000027 | Bacillus cytotoxicus NVH 391-98 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000028 | Bacillus halodurans C-125 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000097 | Brevibacillus brevis NBRC 100599 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000101 | Campylobacter hominis ATCC BAA-381 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000109 | Clostridioides difficile 630 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000116 | Clostridium beijerinckii NCIMB 8052 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000120 | Clostridium botulinum A str. ATCC 19397 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000132 | Clostridium perfringens ATCC 13124 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000162 | Escherichia coli CFT073 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000167 | Escherichia coli SMS-3-5 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000169 | Escherichia coli UTI89 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000171 | Eubacterium eligens ATCC 27750 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000185 | Fusobacterium nucleatum subsp. nucleatum ATCC 25586 | Eubacteria | Fusobacteria | Human | Not Available | RHEA |
| MMDBm0000198 | Lachnoclostridium phytofermentans ISDg | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000218 | Methanobrevibacter smithii ATCC 35061 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0000281 | Streptococcus thermophilus CNRZ1066 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000282 | Streptococcus thermophilus LMD-9 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000316 | Helicobacter pylori | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000353 | Neisseria flavescens | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000354 | Neisseria gonorrhoeae | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000355 | Neisseria mucosa | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000367 | Shigella dysenteriae | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
