| MMDBm0000095 | Bradyrhizobium elkanii USDA 76 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000159 | Escherichia | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000160 | Escherichia coli | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000194 | Klebsiella aerogenes KCTC 2190 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000221 | Ochrobactrum anthropi ATCC 49188 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001067 | Klebsiella variicola | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001144 | Burkholderiales bacterium 1_1_47 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001170 | Acidiphilium cryptum JF-5 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001204 | Rhodoferax ferrireducens T118 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001205 | Alcanivorax borkumensis SK2 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001212 | Alkalilimnicola ehrlichii MLHE-1 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001222 | Anaeromyxobacter dehalogenans 2CP-C | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001223 | Anaeromyxobacter sp. Fw109-5 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001224 | Anaeromyxobacter sp. K | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001247 | Azotobacter vinelandii DJ | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001310 | Bradyrhizobium sp. BTAi1 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001450 | Citrobacter koseri ATCC BAA-895 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001501 | Cronobacter sakazakii ATCC BAA-894 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001517 | Dechloromonas aromatica RCB | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001538 | Desulfococcus oleovorans Hxd3 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001547 | Desulfovibrio vulgaris str. Hildenborough | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001548 | Desulfovibrio alaskensis G20 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001549 | Desulfovibrio vulgaris DP4 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001550 | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Eubacteria | Proteobacteria | Sheep | Not Available | RHEA |
| MMDBm0001552 | Desulfovibrio salexigens DSM 2638 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
