MiMeDB: Showing metabocard for Alpha-D-glucose 6-phosphate (MMDBc0031742)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-18 01:47:21 UTC

Update Date

2022-08-31 18:24:11 UTC

Metabolite ID

MMDBc0031742

Metabolite Identification

Common Name

Alpha-D-glucose 6-phosphate

Description

A D-glucopyranose 6-phosphate where Œ±-D-glucose is the sugar component

Structure

MOL SDF PDB SMILES InChI

 
  Mrv0541 07171214052D          
 
 16 16  0  0  1  0            999 V2000
   11.3247   -8.9946    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   12.1535   -8.9983    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.4960   -8.9946    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.3247   -8.1696    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.3172   -9.8233    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.7883   -8.4662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4954   -8.8767    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   13.4954   -9.7017    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   14.2138   -8.4662    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.2138  -10.1199    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.7883  -10.1199    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.9362   -8.8767    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   14.9362   -9.7017    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   14.2138  -10.9448    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.6509   -8.4662    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.6509  -10.1199    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  3  1  0  0  0  0
  1  4  1  0  0  0  0
  1  5  2  0  0  0  0
  2  6  1  0  0  0  0
  7  6  1  1  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  8 10  1  0  0  0  0
  8 11  1  6  0  0  0
  9 12  1  0  0  0  0
 10 13  1  0  0  0  0
 10 14  1  1  0  0  0
 12 15  1  6  0  0  0
 13 16  1  6  0  0  0
 12 13  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0031742

> <DATABASE_NAME>
MIME

> <SMILES>
O[C@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5-,6+/m1/s1

> <INCHI_KEY>
NBSCHQHZLSJFNQ-DVKNGEFBSA-N

> <FORMULA>
C6H13O9P

> <MOLECULAR_WEIGHT>
260.1358

> <EXACT_MASS>
260.029718526

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_AVERAGE_POLARIZABILITY>
20.555675224936905

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3S,4S,5R,6S)-3,4,5,6-tetrahydroxyoxan-2-yl]methoxy}phosphonic acid

> <ALOGPS_LOGP>
-2.06

> <JCHEM_LOGP>
-3.056105249333333

> <ALOGPS_LOGS>
-0.92

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
6.248752256962443

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.222936327751123

> <JCHEM_PKA_STRONGEST_BASIC>
-3.64935696086094

> <JCHEM_POLAR_SURFACE_AREA>
156.91

> <JCHEM_REFRACTIVITY>
46.796299999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.14e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
α-D-glucose 6-phosphate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-JUL-12   NONE
TITLE     NULL                                                        
COMPND    MOLECULE:                                                   
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-JUL-12         0                                  
HETATM    1  P   UNK     0      21.139 -16.790   0.000  0.00  0.00           P+0
HETATM    2  O   UNK     0      22.686 -16.797   0.000  0.00  0.00           O+0
HETATM    3  O   UNK     0      19.592 -16.790   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0      21.139 -15.250   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      21.125 -18.337   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      23.871 -15.804   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      25.191 -16.570   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      25.191 -18.110   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      26.532 -15.804   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      26.532 -18.890   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      23.871 -18.890   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      27.881 -16.570   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      27.881 -18.110   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      26.532 -20.430   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      29.215 -15.804   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      29.215 -18.890   0.000  0.00  0.00           O+0
CONECT    1    2    3    4    5                                             
CONECT    2    1    6                                                       
CONECT    3    1                                                            
CONECT    4    1                                                            
CONECT    5    1                                                            
CONECT    6    2    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7   10   11                                                  
CONECT    9    7   12                                                       
CONECT   10    8   13   14                                                  
CONECT   11    8                                                            
CONECT   12    9   15   13                                                  
CONECT   13   10   16   12                                                  
CONECT   14   10                                                            
CONECT   15   12                                                            
CONECT   16   13                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   32    0
END

Synonyms

Value	Source
6-O-Phosphono-alpha-D-glucopyranose	ChEBI
ALPHA-D-GLUCOSE-6-phosphATE	ChEBI
6-O-Phosphono-a-D-glucopyranose	Generator
6-O-Phosphono-α-D-glucopyranose	Generator
a-D-GLUCOSE-6-phosphate	Generator
a-D-GLUCOSE-6-phosphoric acid	Generator
alpha-D-GLUCOSE-6-phosphoric acid	Generator
Α-D-glucose-6-phosphate	Generator
Α-D-glucose-6-phosphoric acid	Generator
a-D-Glucose 6 phosphate	Generator
a-D-Glucose 6 phosphoric acid	Generator
alpha-D-Glucose 6 phosphoric acid	Generator
Α-D-glucose 6 phosphate	Generator
Α-D-glucose 6 phosphoric acid	Generator
a-D-Glucose 6-phosphate	Generator
a-D-Glucose 6-phosphoric acid	Generator
alpha-D-Glucose 6-phosphoric acid	Generator
α-D-glucose 6-phosphate	Generator
α-D-glucose 6-phosphoric acid	Generator

Molecular Formula

C₆H₁₃O₉P

Average Mass

260.1358

Monoisotopic Mass

260.029718526

IUPAC Name

{[(2R,3S,4S,5R,6S)-3,4,5,6-tetrahydroxyoxan-2-yl]methoxy}phosphonic acid

Traditional Name

α-D-glucose 6-phosphate

CAS Registry Number

Not Available

SMILES

O[C@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5-,6+/m1/s1

InChI Key

NBSCHQHZLSJFNQ-DVKNGEFBSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hexose phosphates. These are carbohydrate derivatives containing a hexose substituted by one or more phosphate groups.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Hexose phosphates

Alternative Parents

Substituents

Hexose phosphate
Monosaccharide phosphate
Monoalkyl phosphate
Organic phosphoric acid derivative
Alkyl phosphate
Oxane
Phosphoric acid ester
Hemiacetal
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Polyol
Hydrocarbon derivative
Alcohol
Organic oxide
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

D-glucopyranose 6-phosphate (CHEBI:17665 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	31.4 g/L	ALOGPS
logP	-2.1	ALOGPS
logP	-3.1	ChemAxon
logS	-0.92	ALOGPS
pKa (Strongest Acidic)	1.22	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	156.91 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	46.8 m³·mol⁻¹	ChemAxon
Polarizability	20.56 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Proteobacteria	312	Human ; Human feces; Human feces; pleural fluid plaque; bal; Human stool; Pig ; River trout ; Turkey ; Sheep ; Lion ; Human subgingival plaque; Chicken	Unknown
Bacteria/Eubacteria	Cyanobacteria	28	Human
Bacteria/Eubacteria	Firmicutes	118	Human feces; Human ; Human supragingival plaque; Human saliva; Cattle
Bacteria/Eubacteria	Tenericutes	16	Goat ; Human ; Pig
Bacteria	Proteobacteria	7	Human ; Human feces; Human feces; pleural fluid plaque; bal; Human stool; Pig ; River trout ; Turkey ; Sheep ; Lion ; Human subgingival plaque; Chicken	Unknown
Eukaryota/Fungi	Basidiomycota	1	Human feces
Eukaryota/Fungi	Ascomycota	11	Human feces; Human saliva	Unknown
Bacteria/Eubacteria	Bacteroidetes	7	Human ; Human feces
Bacteria/Eubacteria	Actinobacteria	32	Human ; Human feces; Cattle
Bacteria/Eubacteria	Spirochaetes	13	Human
Bacteria/Eubacteria	Chlamydiae	10	Human ; Sheep ; Cat
Bacteria/Eubacteria	Chlorobi	4
Bacteria/Eubacteria	Deinococcus-thermus	5
Eukaryota/Fungi	Microsporidia	1
Bacteria/Eubacteria	Elusimicrobia	1
Bacteria/Eubacteria	Fusobacteria	1	Human ; Human feces
Archaea/Archaea	Euryarchaeota	14
Bacteria/Eubacteria	Chloroflexi	2
Bacteria	nah	1
Archaea	nah	1
Bacteria/Eubacteria	Thermotogae	1
Archaea/Archaea	Crenarchaeota	2
Bacteria/Eubacteria	Aquificae	1

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

DB02007

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

C00668

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

439284

PDB ID

Not Available

ChEBI ID

17665

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for Alpha-D-glucose 6-phosphate (MMDBc0031742)

MOL for #<Metabolite:0x00007f91f3184a70>

3D MOL for #<Metabolite:0x00007f91f3184a70>

3D SDF for #<Metabolite:0x00007f91f3184a70>

3D-SDF for #<Metabolite:0x00007f91f3184a70>

PDB for #<Metabolite:0x00007f91f3184a70>

3D PDB for #<Metabolite:0x00007f91f3184a70>

SMILES for #<Metabolite:0x00007f91f3184a70>

INCHI for #<Metabolite:0x00007f91f3184a70>

Structure for #<Metabolite:0x00007f91f3184a70>

3D Structure for #<Metabolite:0x00007f91f3184a70>