| MMDBm0000055 | Bacteroides thetaiotaomicron VPI-5482 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000160 | Escherichia coli | Eubacteria | Proteobacteria | Human | Unknown | ECMDB |
| MMDBm0000368 | Shigella flexneri | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001200 | Agrobacterium tumefaciens str. C58 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001231 | Aquifex aeolicus VF5 | Eubacteria | Aquificae | Not Available | Not Available | RHEA |
| MMDBm0001248 | Bacillus subtilis subsp. subtilis str. 168 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0001252 | Bacillus cereus ATCC 14579 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001308 | Bradyrhizobium japonicum USDA 110 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001323 | Buchnera aphidicola str. Sg (Schizaphis graminum) | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001344 | Burkholderia multivorans ATCC 17616 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001367 | Campylobacter jejuni subsp. jejuni NCTC 11168 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001385 | Candidatus Koribacter versatilis Ellin345 | Eubacteria | Acidobacteria | Not Available | Not Available | RHEA |
| MMDBm0001409 | Caulobacter crescentus CB15 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001438 | Chlorobium tepidum TLS | Eubacteria | Chlorobi | Not Available | Not Available | RHEA |
| MMDBm0001547 | Desulfovibrio vulgaris str. Hildenborough | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001616 | Flavobacterium psychrophilum JIP02/86 | Eubacteria | Bacteroidetes | Not Available | Not Available | RHEA |
| MMDBm0001652 | Gloeobacter violaceus PCC 7421 | Eubacteria | Cyanobacteria | Not Available | Not Available | RHEA |
| MMDBm0001658 | Haemophilus influenzae Rd KW20 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001685 | Helicobacter pylori 26695 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001686 | Helicobacter pylori J99 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001929 | Neisseria meningitidis MC58 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001966 | Bordetella pertussis Tohama I | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001968 | Geobacter sulfurreducens PCA | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001974 | Leptospira interrogans serovar Lai str. 56601 | Eubacteria | Spirochaetes | Not Available | Not Available | RHEA |
