| MMDBm0000160 | Escherichia coli | Eubacteria | Proteobacteria | Human | Unknown | ECMDB |
| MMDBm0000411 | Rhodobacter capsulatus | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000422 | Micrococcus luteus | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0001231 | Aquifex aeolicus VF5 | Eubacteria | Aquificae | Not Available | Not Available | RHEA |
| MMDBm0001248 | Bacillus subtilis subsp. subtilis str. 168 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0001308 | Bradyrhizobium japonicum USDA 110 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001322 | Buchnera aphidicola str. APS (Acyrthosiphon pisum) | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001323 | Buchnera aphidicola str. Sg (Schizaphis graminum) | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001658 | Haemophilus influenzae Rd KW20 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001880 | Mycobacterium tuberculosis H37Rv | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0001881 | Mycobacterium leprae TN | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0001882 | Mycobacterium tuberculosis CDC1551 | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0001884 | Mycobacterium bovis AF2122/97 | Eubacteria | Actinobacteria | Cattle | Not Available | RHEA |
| MMDBm0001888 | Mycobacterium smegmatis str. MC2 155 | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0002073 | Rhizobium sp. NGR234 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002488 | Saccharopolyspora erythraea NRRL 2338 | Eubacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0002635 | Streptomyces coelicolor A3(2) | Eubacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0002668 | Synechococcus sp. PCC 7002 | Eubacteria | Cyanobacteria | Not Available | Not Available | RHEA |
| MMDBm0002688 | Thermobifida fusca YX | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0008619 | Zymoseptoria tritici IPO323 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0018909 | Neocamarosporium betae | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0023010 | Macrophomina phaseolina MS6 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0028933 | Aspergillus flavus | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0029026 | Aspergillus fumigatus Af293 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
