MiMeDB: Showing metabocard for beta-D-Ribopyranose (MMDBc0030147)

Pharmaceutical

Xenobiotic

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-11-17 23:55:44 UTC

Update Date

2024-10-15 17:28:04 UTC

Metabolite ID

MMDBc0030147

Metabolite Identification

Common Name

beta-D-Ribopyranose

Description

Beta-D-ribopyranose is a member of the chemical class known as Pentoses. These are monosaccharides in which the carbohydrate moiety contains five carbon atoms. Ribose 5-phosphate is involved in the pentose phosphate pathway and ribose degradation. The pentose phosphate pathway plays several key roles in metabolism including supply of biosynthetic carbon skeletons and reducing power. (PMID 9546650 ) Ribose-5-phosphate isomerase A (RpiA) plays an important role in interconverting between ribose-5-phosphate (R5P) and ribulose-5-phosphate in the pentose phosphate pathway and the Calvin cycle. (PMID 19214439 ). In Escherichia coli, RpiA catalyzes the interconversion of ribose-5-phosphate and ribulose-5-phosphate and is a key enzyme in the pentose phosphate pathway. (PMID 12182339 ).

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
Ribose	ChEBI
RIBOSE(pyranose form)	ChEBI
b-D-Ribopyranose	Generator
Β-D-ribopyranose	Generator
D-Ribose	HMDB

Molecular Formula

C₅H₁₀O₅

Average Mass

150.1299

Monoisotopic Mass

150.05282343

IUPAC Name

(2R,3R,4R,5R)-oxane-2,3,4,5-tetrol

Traditional Name

β-D-ribopyranose

CAS Registry Number

50-69-1

SMILES

O[C@@H]1CO[C@@H](O)[C@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4-,5-/m1/s1

InChI Key

SRBFZHDQGSBBOR-TXICZTDVSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pentoses. These are monosaccharides in which the carbohydrate moiety contains five carbon atoms.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Pentoses

Alternative Parents

Substituents

Pentose monosaccharide
Oxane
Secondary alcohol
Hemiacetal
Oxacycle
Organoheterocyclic compound
Polyol
Hydrocarbon derivative
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

D-ribopyranose (CHEBI:27476 )

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Property	Value	Source
Water Solubility	1220 g/L	ALOGPS
logP	-2.6	ALOGPS
logP	-2.3	ChemAxon
logS	0.91	ALOGPS
pKa (Strongest Acidic)	11.31	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	90.15 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	29.96 m³·mol⁻¹	ChemAxon
Polarizability	13.39 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	splash10-000x-9400000000-f20d1c35a7eeea1609a5	2017-09-01	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (4 TMS) - 70eV, Positive	splash10-00g0-9256300000-ae2d57025e3828494249	2017-10-06	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-0ue9-1900000000-07783f4be8db8a14f6f0	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-0f89-1900000000-eebbf905b1ed94cebf13	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-0cka-9100000000-9f3469ad5a1c8e425555	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-0002-2900000000-3482c4e67045ff82c4f4	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-001j-4900000000-aedd03247641e8491448	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-0006-9000000000-b0a8f8b59e745078a05e	2015-09-15	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-18	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-18	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-23	434.1
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	290.1
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (void)	2025-10-23	40.4
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	222.0
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	286.5
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (void)	2025-10-23	321.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (void)	2025-10-23	619.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	682.9
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	786.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	178.9
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	355.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (void)	2025-10-23	194.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	38.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	309.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	652.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (void)	2025-10-23	75.7
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (void)	2025-10-23	260.1
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	742.0
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	583.4

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	beta-D-Ribopyranose_TMS_1	C[Si](C)(C)O[C@@H]1CO[C@@H](O)[C@H](O)[C@@H]1O	standard non polar	2025-10-24	1798.53
Gas Chromatography	beta-D-Ribopyranose_TMS_2	C[Si](C)(C)O[C@@H]1OC[C@@H](O)[C@@H](O)[C@H]1O	standard non polar	2025-10-24	2015.17
Gas Chromatography	beta-D-Ribopyranose_TMS_3	C[Si](C)(C)O[C@H]1[C@H](O)OC[C@@H](O)[C@H]1O	standard non polar	2025-10-24	1956.04
Gas Chromatography	beta-D-Ribopyranose_TMS_4	C[Si](C)(C)O[C@@H]1[C@H](O)CO[C@@H](O)[C@@H]1O	standard non polar	2025-10-24	2214.68
Gas Chromatography	beta-D-Ribopyranose_TMS_5	C[Si](C)(C)O[C@@H]1OC[C@@H](O[Si](C)(C)C)[C@@H](O)[C@H]1O	standard non polar	2025-10-24	2045.03
Gas Chromatography	beta-D-Ribopyranose_TMS_6	C[Si](C)(C)O[C@@H]1CO[C@@H](O)[C@H](O[Si](C)(C)C)[C@@H]1O	standard non polar	2025-10-24	1618.53
Gas Chromatography	beta-D-Ribopyranose_TMS_7	C[Si](C)(C)O[C@@H]1[C@H](O[Si](C)(C)C)CO[C@@H](O)[C@@H]1O	standard non polar	2025-10-24	1606.1
Gas Chromatography	beta-D-Ribopyranose_TMS_8	C[Si](C)(C)O[C@@H]1OC[C@@H](O)[C@@H](O[Si](C)(C)C)[C@H]1O	standard non polar	2025-10-24	1305.42
Gas Chromatography	beta-D-Ribopyranose_TMS_9	C[Si](C)(C)O[C@@H]1OC[C@@H](O)[C@@H](O)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-24	1924.51
Gas Chromatography	beta-D-Ribopyranose_TMS_10	C[Si](C)(C)O[C@@H]1[C@H](O)CO[C@@H](O)[C@@H]1O[Si](C)(C)C	standard non polar	2025-10-24	1967.95
Gas Chromatography	beta-D-Ribopyranose_TMS_11	C[Si](C)(C)O[C@@H]1OC[C@@H](O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H]1O	standard non polar	2025-10-24	2079.4
Gas Chromatography	beta-D-Ribopyranose_TMS_12	C[Si](C)(C)O[C@@H]1OC[C@@H](O[Si](C)(C)C)[C@@H](O)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-24	1660.41
Gas Chromatography	beta-D-Ribopyranose_TMS_13	C[Si](C)(C)O[C@@H]1CO[C@@H](O)[C@H](O[Si](C)(C)C)[C@@H]1O[Si](C)(C)C	standard non polar	2025-10-24	2202.32
Gas Chromatography	beta-D-Ribopyranose_TMS_14	C[Si](C)(C)O[C@@H]1OC[C@@H](O)[C@@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-24	1839.03
Gas Chromatography	beta-D-Ribopyranose_TMS_15	C[Si](C)(C)O[C@@H]1OC[C@@H](O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-24	1759.4
Gas Chromatography	beta-D-Ribopyranose_TMS_1	C[Si](C)(C)O[C@@H]1CO[C@@H](O)[C@H](O)[C@@H]1O	standard polar	2025-10-24	1970.39
Gas Chromatography	beta-D-Ribopyranose_TMS_2	C[Si](C)(C)O[C@@H]1OC[C@@H](O)[C@@H](O)[C@H]1O	standard polar	2025-10-24	2253.04
Gas Chromatography	beta-D-Ribopyranose_TMS_3	C[Si](C)(C)O[C@H]1[C@H](O)OC[C@@H](O)[C@H]1O	standard polar	2025-10-24	1851.27
Gas Chromatography	beta-D-Ribopyranose_TMS_4	C[Si](C)(C)O[C@@H]1[C@H](O)CO[C@@H](O)[C@@H]1O	standard polar	2025-10-24	2115.48
Gas Chromatography	beta-D-Ribopyranose_TMS_5	C[Si](C)(C)O[C@@H]1OC[C@@H](O[Si](C)(C)C)[C@@H](O)[C@H]1O	standard polar	2025-10-24	1840.28
Gas Chromatography	beta-D-Ribopyranose_TMS_6	C[Si](C)(C)O[C@@H]1CO[C@@H](O)[C@H](O[Si](C)(C)C)[C@@H]1O	standard polar	2025-10-24	2484.57
Gas Chromatography	beta-D-Ribopyranose_TMS_7	C[Si](C)(C)O[C@@H]1[C@H](O[Si](C)(C)C)CO[C@@H](O)[C@@H]1O	standard polar	2025-10-24	1896.2
Gas Chromatography	beta-D-Ribopyranose_TMS_8	C[Si](C)(C)O[C@@H]1OC[C@@H](O)[C@@H](O[Si](C)(C)C)[C@H]1O	standard polar	2025-10-24	1586.34
Gas Chromatography	beta-D-Ribopyranose_TMS_9	C[Si](C)(C)O[C@@H]1OC[C@@H](O)[C@@H](O)[C@H]1O[Si](C)(C)C	standard polar	2025-10-24	2103.63
Gas Chromatography	beta-D-Ribopyranose_TMS_10	C[Si](C)(C)O[C@@H]1[C@H](O)CO[C@@H](O)[C@@H]1O[Si](C)(C)C	standard polar	2025-10-24	1777.55
Gas Chromatography	beta-D-Ribopyranose_TMS_11	C[Si](C)(C)O[C@@H]1OC[C@@H](O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H]1O	standard polar	2025-10-24	2407.49
Gas Chromatography	beta-D-Ribopyranose_TMS_12	C[Si](C)(C)O[C@@H]1OC[C@@H](O[Si](C)(C)C)[C@@H](O)[C@H]1O[Si](C)(C)C	standard polar	2025-10-24	1567.22
Gas Chromatography	beta-D-Ribopyranose_TMS_13	C[Si](C)(C)O[C@@H]1CO[C@@H](O)[C@H](O[Si](C)(C)C)[C@@H]1O[Si](C)(C)C	standard polar	2025-10-24	2176.11
Gas Chromatography	beta-D-Ribopyranose_TMS_14	C[Si](C)(C)O[C@@H]1OC[C@@H](O)[C@@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard polar	2025-10-24	2590.22
Gas Chromatography	beta-D-Ribopyranose_TMS_15	C[Si](C)(C)O[C@@H]1OC[C@@H](O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C	standard polar	2025-10-24	2336.12

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Name	SMPDB/PathBank	Species
Ribose Degradation		Escherichia coli Escherichia coli SMS-3-5 Escherichia coli UTI89 Escherichia coli 55989 Escherichia coli SE11 Actinobacillus succinogenes 130Z Escherichia coli CFT073 Ochrobactrum anthropi Bacillus subtilis Klebsiella pneumoniae Bacillus cereus Pseudomonas fluorescens Pf-5 Streptomyces griseus subsp. griseus NBRC 13350 Bacillus amyloliquefaciens Streptococcus pneumoniae Salmonella enterica Staphylococcus aureus Haemophilus influenzae Haemophilus influenzae Rd KW20 Clostridium perfringens Lactobacillus fermentum IFO 3956 Streptococcus pneumoniae TIGR4 Streptomyces avermitilis MA-4680 Anaerococcus prevotii DSM 20548 Bacillus cereus AH187 (F4810/72) Bacillus halodurans C-125 Bifidobacterium longum subsp. longum JDM301 Bifidobacterium mongoliense DSM 21395 Clostridium perfringens ATCC 13124 Clostridium saccharolyticum Clostridium sticklandii Enterococcus faecalis Enterococcus hirae ATCC 9790 Lactobacillus paracasei Lactobacillus reuteri Ochrobactrum anthropi ATCC 49188 Ochrobactrum intermedium LMG 3301 Ruminococcus torques L2-14 lactobacillus jensenii Spirochaeta thermophila Pseudomonas fluorescens Pseudomonas putida Pseudomonas syringae Mesorhizobium loti Chromobacterium violaceum Citrobacter koseri Proteus mirabilis Shigella boydii Shigella dysenteriae Shigella flexneri Shigella sonnei Aeromonas hydrophila Vibrio cholerae Vibrio vulnificus Fusobacterium ulcerans Desulfovibrio salexigens Staphylococcus epidermidis Streptococcus gordonii Streptococcus agalactiae Streptococcus dysgalactiae Streptococcus equi Streptococcus uberis Bacillus licheniformis Priestia megaterium Bacillus mycoides Bacillus pumilus Bacillus thuringiensis Clostridium butyricum Clostridium novyi Weissella confusa Lactobacillus plantarum Lactobacillus gasseri Lactobacillus sakei Corynebacterium glutamicum Mycoplasma pulmonis Thermotoga neapolitana Staphylococcus saprophyticus Enterococcus avium Lactobacillus johnsonii Enterococcus casseliflavus Veillonella atypica Veillonella dispar Enterococcus cecorum Mitsuokella multacida Brachyspira pilosicoli Enterococcus durans Blautia hydrogenotrophica Desulfotomaculum reducens Enterobacter cancerogenus Bacillus clausii Clostridium methylpentosum Bacillus selenitireducens Citrobacter youngae Leuconostoc kimchii Ilyobacter polytropus Escherichia albertii Lactobacillus antri Streptococcus pseudopneumoniae Enterococcus faecium Enterococcus hirae Klebsiella variicola Lactobacillus rhamnosus Lactococcus lactis Veillonella parvula Granulicatella adiacens Actinobacillus pleuropneumoniae serovar 5b str. L20 Actinobacillus pleuropneumoniae serovar 3 str. JL03 Actinobacillus pleuropneumoniae serovar 7 str. AP76 Aeromonas hydrophila subsp. hydrophila ATCC 7966 Bacillus cereus ATCC 10987 Bacillus megaterium QM B1551 Bacillus thuringiensis serovar konkukian str. 97-27 Bacillus licheniformis ATCC 14580 Bacillus clausii KSM-K16 Bacillus amyloliquefaciens FZB42 Bacillus pumilus SAFR-032 Bacillus cereus B4264 Bacillus cereus AH820 Bacillus cereus G9842 Bacillus cereus Q1 Priestia megaterium DSM 319 Bacillus subtilis subsp. spizizenii str. W23 Bacillus amyloliquefaciens DSM 7 Citrobacter koseri ATCC BAA-895 Clostridium perfringens str. 13 Clostridium sticklandii DSM 519 Clostridium perfringens SM101 Cronobacter sakazakii ATCC BAA-894 Enterobacter cloacae subsp. cloacae ATCC 13047 Escherichia coli APEC O1 Escherichia coli E24377A Escherichia coli O127:H6 str. E2348/69 Escherichia coli UMN026 Escherichia fergusonii ATCC 35469 Escherichia coli ED1a Escherichia coli IAI39 Haemophilus influenzae 86-028NP Haemophilus influenzae PittGG Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Lactobacillus plantarum WCFS1 Lactobacillus johnsonii NCC 533 Lactobacillus acidophilus NCFM Lactobacillus sakei subsp. sakei 23K Lactobacillus brevis ATCC 367 Lactobacillus casei ATCC 334 Lactobacillus reuteri DSM 20016 Lactobacillus reuteri SD2112 Lactococcus lactis subsp. lactis Il1403 Lactococcus lactis subsp. cremoris SK11 Lactococcus lactis subsp. cremoris MG1363 Laribacter hongkongensis HLHK9 Escherichia coli 042 Edwardsiella tarda FL6-60 Filifactor alocis ATCC 35896 Pediococcus pentosaceus ATCC 25745 Proteus mirabilis HI4320 Pseudomonas putida KT2440 Pseudomonas fluorescens Pf0-1 Pseudomonas fluorescens SBW25 Pseudomonas putida GB-1 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Newport str. SL254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica subsp. enterica serovar Dublin str. CT02021853 Shigella sonnei Ss046 Shigella flexneri 5 str. 8401 Staphylococcus aureus subsp. aureus Mu50 Staphylococcus aureus subsp. aureus COL Staphylococcus aureus subsp. aureus MRSA252 Staphylococcus epidermidis RP62A Staphylococcus epidermidis ATCC 12228 Staphylococcus haemolyticus JCSC1435 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Staphylococcus aureus subsp. aureus NCTC 8325 Streptococcus agalactiae 2603V/R Streptococcus agalactiae NEM316 Streptococcus pneumoniae D39 Streptococcus pneumoniae Hungary19A-6 Streptococcus uberis 0140J Streptococcus pneumoniae JJA Vibrio parahaemolyticus RIMD 2210633 Yersinia enterocolitica subsp. enterocolitica 8081 Yersinia pseudotuberculosis IP 31758 Cetobacterium somerae ATCC BAA-474 Laribacter hongkongensis Aeromonas caviae Aeromonas media Aeromonas veronii Succinivibrio dextrinosolvens Cedecea davisae Cedecea davisae DSM 4568 Citrobacter amalonaticus Citrobacter amalonaticus Y19 Citrobacter freundii Citrobacter youngae ATCC 29220 Enterobacter hormaechei Escherichia albertii TW07627 Klebsiella aerogenes Salmonella Salmonella enterica subsp. enterica serovar Typhimurium Trabulsiella guamensis Trabulsiella guamensis ATCC 49490 Edwardsiella tarda Edwardsiella tarda ATCC 23685 Hafnia alvei Hafnia alvei ATCC 51873 Morganella morganii Morganella morganii subsp. morganii KT Providencia rustigianii DSM 4541 Providencia stuartii ATCC 25827 Serratia marcescens subsp. marcescens Db11 Yersinia enterocolitica Yersinia pestis Yersinia pseudotuberculosis Plesiomonas shigelloides 302-73 Actinobacillus pleuropneumoniae Haemophilus haemolyticus Haemophilus sputorum Grimontia hollisae CIP 101886 Vibrio fluvialis Vibrio fluvialis PG41 Vibrio parahaemolyticus Vibrio mimicus Trueperella pyogenes Bifidobacterium mongoliense Scardovia inopinata F0304 Corynebacterium durum Corynebacterium durum F0235 Corynebacterium tuberculostearicum Corynebacterium tuberculostearicum SK141 Streptomyces avermitilis Olsenella profusa F0195 Collinsella tanakaei YIT 12063 Bacillus altitudinis Aneurinibacillus aneurinilyticus Aneurinibacillus aneurinilyticus ATCC 12856 Paenibacillus lactis 154 Exiguobacterium aurantiacum Abiotrophia defectiva Abiotrophia defectiva ATCC 49176 Granulicatella adiacens ATCC 49175 Granulicatella elegans Granulicatella elegans ATCC 700633 Enterococcus cecorum DSM 20682 = ATCC 43198 Enterococcus dispar ATCC 51266 Lactobacillus paracasei subsp. paracasei 8700:2 Lactobacillus rhamnosus LMS2-1 Lactobacillus hilgardii DSM 20176 = ATCC 8290 Lactobacillus antri DSM 16041 Lactobacillus coleohominis 101-4-CHN Lactobacillus mucosae LM1 Lactobacillus reuteri CF48-3A Lactobacillus reuteri MM4-1A Pediococcus acidilactici DSM 20284 Pediococcus pentosaceus Oenococcus oeni Weissella cibaria Lactococcus garvieae Streptococcus equi subsp. zooepidemicus H70 Streptococcus equi subsp. zooepidemicus MGCS10565 Butyricicoccus pullicaecorum Butyricicoccus pullicaecorum 1.2 Clostridium butyricum E4 str. BoNT E BL5262 Clostridium celatum DSM 1785 Blautia hydrogenotrophica DSM 10507 Clostridium asparagiforme DSM 15981 [Clostridium] bolteae ATCC BAA-613 [Clostridium] hylemonae DSM 15053 [Ruminococcus] gnavus ATCC 29149 Flavonifractor plautii ATCC 29863 Ruminococcus callidus ATCC 27760 [Clostridium] leptum DSM 753 Phascolarctobacterium succinatutens YIT 12067 Mitsuokella multacida DSM 20544 Dialister succinatiphilus Dialister succinatiphilus YIT 11850 Veillonella atypica ACS-049-V-Sch6 Veillonella dispar ATCC 17748 Anaerococcus hydrogenalis DSM 7454 Anaerococcus vaginalis ATCC 51170 Peptoniphilus indolicus ATCC 29427 Streptomyces coelicolor A3(2) Vibrio cholerae M66-2 Vibrio cholerae O1 biovar El Tor str. N16961 Corynebacterium glutamicum ATCC 13032 Bacillus cytotoxicus NVH 391-98 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Anoxybacillus flavithermus WK1 Bacillus selenitireducens MLS10 Bifidobacterium dentium Bd1 Clostridium tetani E88 Clostridium novyi NT Clostridium thermocellum ATCC 27405 Clostridium cellulolyticum H10 Corynebacterium glutamicum R Deinococcus proteolyticus MRP Desulfotomaculum reducens MI-1 Exiguobacterium sibiricum 255-15 Exiguobacterium sp. AT1b Gardnerella vaginalis ATCC 14019 Geobacillus kaustophilus HTA426 Geobacillus thermodenitrificans NG80-2 Lactobacillus johnsonii FI9785 Leuconostoc kimchii IMSNU 11154 Macrococcus caseolyticus JCSC5402 Natranaerobius thermophilus JW/NM-WN-LF Oceanobacillus iheyensis HTE831 Oenococcus oeni PSU-1 Rubrobacter xylanophilus DSM 9941 Sanguibacter keddieii DSM 10542 Staphylococcus carnosus subsp. carnosus TM300 Streptococcus equi subsp. zooepidemicus Streptomyces scabiei 87.22 Streptomyces violaceusniger Tu 4113 Streptosporangium roseum DSM 43021 Symbiobacterium thermophilum IAM 14863 Thermoanaerobacter sp. X514 Thermoanaerobacter pseudethanolicus ATCC 33223 Thermoanaerobacterium thermosaccharolyticum DSM 571 Acidipropionibacterium acidipropionici ATCC 4875 Anaerobutyricum hallii DSM 3353 Klebsiella aerogenes KCTC 2190 Acidovorax citrulli AAC00-1 Aeromonas salmonicida subsp. salmonicida A449 Agrobacterium vitis S4 Vibrio fischeri MJ11 Aliivibrio salmonicida LFI1238 Bradyrhizobium sp. BTAi1 Brucella abortus bv. 1 str. 9-941 Brucella ovis ATCC 25840 Brucella abortus S19 Brucella melitensis ATCC 23457 Cellulophaga algicola DSM 14237 Chloroflexus aggregans DSM 9485 Citrobacter rodentium ICC168 Coprothermobacter proteolyticus DSM 5265 Cronobacter turicensis z3032 Desulfovibrio salexigens DSM 2638 Dickeya dadantii Ech703 Dickeya zeae Ech1591 Dickeya dadantii Ech586 Dickeya dadantii 3937 Edwardsiella ictaluri 93-146 Enterobacter sp. 638 Enterobacter cloacae SCF1 Erwinia tasmaniensis Et1/99 Erwinia amylovora CFBP1430 Erwinia billingiae Eb661 Ferrimonas balearica DSM 9799 Gluconacetobacter diazotrophicus PAl 5 Haemophilus parasuis SH0165 Haemophilus influenzae F3047 Heliobacterium modesticaldum Ice1 Ilyobacter polytropus DSM 2926 Isosphaera pallida ATCC 43644 Jannaschia sp. CCS1 Klebsiella pneumoniae 342 Kosmotoga olearia TBF 19.5.1 Mycoplasma pulmonis UAB CTIP Chromobacterium violaceum ATCC 12472 Opitutus terrae PB90-1 Denitrovibrio acetiphilus DSM 12809 Rhodobacter capsulatus SB1003 Pantoea ananatis LMG 20103 Pasteurella multocida subsp. multocida str. Pm70 Pectobacterium atrosepticum SCRI1043 Pectobacterium carotovorum subsp. carotovorum PC1 Petrotoga mobilis SJ95 Photobacterium profundum SS9 Photorhabdus luminescens subsp. laumondii TTO1 Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 Pseudomonas syringae pv. tomato str. DC3000 Pseudomonas syringae pv. phaseolicola 1448A Pseudomonas syringae pv. syringae B728a Pseudomonas entomophila L48 Pseudomonas fulva 12-X Psychromonas ingrahamii 37 Rhodopirellula baltica SH 1 Salmonella enterica subsp. enterica serovar Paratyphi A str. Shewanella pealeana ATCC 700345 Shewanella halifaxensis HAW-EB4 Shewanella violacea DSS12 Shigella flexneri 2a str. 301 Shigella boydii Sb227 Shigella boydii CDC 3083-94 Thermosipho africanus TCF52B Thermotoga petrophila RKU-1 Thermotoga neapolitana DSM 4359 Tolumonas auensis DSM 9187 Treponema brennaborense DSM 12168 Variovorax paradoxus EPS Vibrio vulnificus CMCP6 Vibrio vulnificus YJ016 Vibrio splendidus LGP32 Xenorhabdus bovienii SS-2004 Atlantibacter hermannii NBRC 105704 Klebsiella michiganensis KCTC 1686 Chania multitudinisentens RB-25 Veillonella seminalis ACS-216-V-Col6b Veillonella sp. 6_1_27

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Proteobacteria	103	Human ; Human feces; Human feces; pleural fluid plaque; bal; Pig ; Cattle ; River trout ; Chicken	Unknown
Bacteria/Eubacteria	Firmicutes	82	Human feces; Human ; Cattle
Bacteria/Eubacteria	Chloroflexi	1
Bacteria/Eubacteria	Actinobacteria	7	Human ; Human feces
Bacteria	Proteobacteria	3	Human ; Human feces; Human feces; pleural fluid plaque; bal; Pig ; Cattle ; River trout ; Chicken	Unknown
Bacteria/Eubacteria	Thermotogae	7
Bacteria/Eubacteria	Planctomycetes	1

Exposure Sources

Other Exposures

Source Type	Data Source	Reference
Drugs - Antimicrobial	U.S. Environmental Protection Agency	CompTox
Cosmetics	U.S. Environmental Protection Agency	CompTox
Domestics	U.S. Environmental Protection Agency	CompTox

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

HMDB0012194

DrugBank ID

DB04286

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB028843

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

C08353

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

441481

PDB ID

Not Available

ChEBI ID

27476

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for beta-D-Ribopyranose (MMDBc0030147)

MOL for #<Metabolite:0x00007f9abc439d70>

3D MOL for #<Metabolite:0x00007f9abc439d70>

3D SDF for #<Metabolite:0x00007f9abc439d70>

3D-SDF for #<Metabolite:0x00007f9abc439d70>

PDB for #<Metabolite:0x00007f9abc439d70>

3D PDB for #<Metabolite:0x00007f9abc439d70>

SMILES for #<Metabolite:0x00007f9abc439d70>

INCHI for #<Metabolite:0x00007f9abc439d70>

Structure for #<Metabolite:0x00007f9abc439d70>

3D Structure for #<Metabolite:0x00007f9abc439d70>