| MMDBm0000028 | Bacillus halodurans C-125 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000046 | Bacteroides fragilis NCTC 9343 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000047 | Bacteroides fragilis YCH46 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000055 | Bacteroides thetaiotaomicron VPI-5482 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000160 | Escherichia coli | Eubacteria | Proteobacteria | Human | Unknown | ECMDB |
| MMDBm0000162 | Escherichia coli CFT073 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000167 | Escherichia coli SMS-3-5 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000169 | Escherichia coli UTI89 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000171 | Eubacterium eligens ATCC 27750 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000198 | Lachnoclostridium phytofermentans ISDg | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000368 | Shigella flexneri | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001200 | Agrobacterium tumefaciens str. C58 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001248 | Bacillus subtilis subsp. subtilis str. 168 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0001255 | Bacillus licheniformis ATCC 14580 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001257 | Bacillus clausii KSM-K16 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0001260 | Bacillus pumilus SAFR-032 | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0001348 | Burkholderia phytofirmans PsJN | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001349 | Burkholderia cenocepacia J2315 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001359 | Caldicellulosiruptor bescii DSM 6725 | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0001409 | Caulobacter crescentus CB15 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001411 | Caulobacter crescentus NA1000 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001501 | Cronobacter sakazakii ATCC BAA-894 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001562 | Dickeya dadantii 3937 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001565 | Edwardsiella ictaluri 93-146 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001571 | Enterobacter sp. 638 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
