| MMDBm0000003 | Acidaminococcus fermentans DSM 20731 | Eubacteria | Firmicutes | Pig | Microbial culture | CMMC-Kb |
| MMDBm0000015 | Akkermansia muciniphila ATCC BAA-835 | Eubacteria | Verrucomicrobia | Human | Microbial culture | CMMC-Kb |
| MMDBm0000018 | Alistipes finegoldii DSM 17242 | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000021 | Anaerostipes caccae | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000092 | Blautia hansenii DSM 20583 | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000134 | Clostridium saccharolyticum | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000147 | Dorea formicigenerans ATCC 27755 | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000171 | Eubacterium eligens ATCC 27750 | Eubacteria | Firmicutes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000173 | Eubacterium rectale ATCC 33656 | Eubacteria | Firmicutes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000191 | Intestinimonas butyriciproducens | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0000223 | Odoribacter splanchnicus DSM 20712 | Eubacteria | Bacteroidetes | Human | Microbial culture | CMMC-Kb |
| MMDBm0000527 | Streptomyces griseus | Eubacteria | Actinobacteria | Not Available | Metabolic reconstruction | NPAtlas |
| MMDBm0001038 | Bacteroides xylanisolvens | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0001575 | Enterococcus faecalis V583 | Eubacteria | Firmicutes | Human | Microbial culture | CMMC-Kb |
| MMDBm0392086 | Bacteroides cellulosilyticus DSM 14838 | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0392196 | Bacteroides intestinalis DSM 17393 | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0392208 | Bacteroides ovatus ATCC 8483 | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0392455 | Bacteroides sp. D2 | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0393353 | Butyricimonas virosa DSM 23226 | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0394968 | Parabacteroides johnsonii DSM 18315 | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0394970 | Parabacteroides merdae ATCC 43184 | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0395117 | Bacteroides plebeius DSM 17135 | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0648061 | Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 | Eubacteria | Actinobacteria | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0648137 | Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 | Eubacteria | Actinobacteria | Human Feces | Microbial culture | CMMC-Kb |
| MMDBm0724109 | Collinsella stercoris DSM 13279 | Eubacteria | Actinobacteria | Human Feces | Microbial culture | CMMC-Kb |