MiMeDB: Showing metabocard for N-Acetyl-1-methylhistidine (MMDBc0000743)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2020-12-10 18:54:00 UTC

Update Date

2024-04-30 19:33:36 UTC

Metabolite ID

MMDBc0000743

Metabolite Identification

Common Name

N-Acetyl-1-methylhistidine

Description

N-Acetyl-1-methylhistidine belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing histidine or a derivative thereof resulting from a reaction of histidine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. N-Acetyl-1-methylhistidine is an acetylated derivative of 1-methylhistidine and a very strong basic compound (based on its pKa). It has been found to be associated with chronic kidney disease: the higher the N-acetyl-1-methylhistidine levels, the lower the estimated glomerular filtration rate. This could make N-acetyl-1-methylhistidine a biomarker for chronic kidney disease (PMID: 24625756 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652304272022152D          

 15 15  0  0  0  0            999 V2000
   -0.0466    0.7831    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6683    0.3709    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3810    0.7831    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0960    0.3709    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3810    1.6071    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6683   -0.4530    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4302    0.8656    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0977    0.3802    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8428   -0.4042    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0176   -0.4042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7626    0.3802    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3830   -0.8656    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3830   -1.6910    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0977   -0.4530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3279   -1.0719    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  6  1  1  0  0  0
  3  4  1  0  0  0  0
  3  5  2  0  0  0  0
 10 11  2  0  0  0  0
  7  8  2  0  0  0  0
  7 11  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  1 11  1  0  0  0  0
  6 12  1  0  0  0  0
 12 14  1  0  0  0  0
 12 13  2  0  0  0  0
  9 15  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0000743

> <DATABASE_NAME>
MIME

> <SMILES>
CN1C=NC(C[C@H](NC(C)=O)C(O)=O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C9H13N3O3/c1-6(13)11-8(9(14)15)3-7-4-12(2)5-10-7/h4-5,8H,3H2,1-2H3,(H,11,13)(H,14,15)/t8-/m0/s1

> <INCHI_KEY>
GVRCKHXHWSYDEF-QMMMGPOBSA-N

> <FORMULA>
C9H13N3O3

> <MOLECULAR_WEIGHT>
211.221

> <EXACT_MASS>
211.095691291

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
28

> <JCHEM_AVERAGE_POLARIZABILITY>
21.171527657504345

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-acetamido-3-(1-methyl-1H-imidazol-4-yl)propanoic acid

> <ALOGPS_LOGP>
-0.55

> <JCHEM_LOGP>
-2.2458548384717374

> <ALOGPS_LOGS>
-1.77

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.808397993008239

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.6162954160514156

> <JCHEM_PKA_STRONGEST_BASIC>
6.402591340381397

> <JCHEM_POLAR_SURFACE_AREA>
84.22

> <JCHEM_REFRACTIVITY>
51.8338

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.60e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-acetamido-3-(1-methylimidazol-4-yl)propanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 27-APR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-APR-20         0                                  
HETATM    1  C   UNK     0      -0.087   1.462   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.247   0.692   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.578   1.462   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       3.913   0.692   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0       2.578   3.000   0.000  0.00  0.00           O+0
HETATM    6  N   UNK     0       1.247  -0.846   0.000  0.00  0.00           N+0
HETATM    7  N   UNK     0      -2.670   1.616   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0      -3.916   0.710   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0      -3.440  -0.754   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0      -1.900  -0.754   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.424   0.710   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.582  -1.616   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       2.582  -3.156   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       3.916  -0.846   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -4.345  -2.001   0.000  0.00  0.00           C+0
CONECT    1    2   11                                                       
CONECT    2    1    3    6                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3                                                            
CONECT    6    2   12                                                       
CONECT    7    8   11                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   15                                                  
CONECT   10   11    9                                                       
CONECT   11   10    7    1                                                  
CONECT   12    6   14   13                                                  
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15    9                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   30    0
END

COMPND    HMDB0240340
HETATM    1  C1  UNL     1       3.869   1.147  -0.829  1.00  0.00           C  
HETATM    2  C2  UNL     1       3.159  -0.133  -0.703  1.00  0.00           C  
HETATM    3  O1  UNL     1       3.805  -1.197  -0.713  1.00  0.00           O  
HETATM    4  N1  UNL     1       1.763  -0.167  -0.571  1.00  0.00           N  
HETATM    5  C3  UNL     1       0.980  -1.378  -0.442  1.00  0.00           C  
HETATM    6  C4  UNL     1       0.257  -1.451   0.876  1.00  0.00           C  
HETATM    7  C5  UNL     1      -0.682  -0.322   1.070  1.00  0.00           C  
HETATM    8  C6  UNL     1      -2.015  -0.217   0.729  1.00  0.00           C  
HETATM    9  N2  UNL     1      -2.480   1.005   1.097  1.00  0.00           N  
HETATM   10  C7  UNL     1      -3.824   1.537   0.928  1.00  0.00           C  
HETATM   11  C8  UNL     1      -1.464   1.650   1.655  1.00  0.00           C  
HETATM   12  N3  UNL     1      -0.371   0.852   1.642  1.00  0.00           N  
HETATM   13  C9  UNL     1       0.083  -1.524  -1.608  1.00  0.00           C  
HETATM   14  O2  UNL     1       0.093  -0.640  -2.527  1.00  0.00           O  
HETATM   15  O3  UNL     1      -0.785  -2.581  -1.764  1.00  0.00           O  
HETATM   16  H1  UNL     1       4.805   1.032  -1.441  1.00  0.00           H  
HETATM   17  H2  UNL     1       4.201   1.563   0.145  1.00  0.00           H  
HETATM   18  H3  UNL     1       3.275   1.926  -1.362  1.00  0.00           H  
HETATM   19  H4  UNL     1       1.235   0.729  -0.564  1.00  0.00           H  
HETATM   20  H5  UNL     1       1.700  -2.223  -0.469  1.00  0.00           H  
HETATM   21  H6  UNL     1      -0.266  -2.431   0.914  1.00  0.00           H  
HETATM   22  H7  UNL     1       1.032  -1.494   1.671  1.00  0.00           H  
HETATM   23  H8  UNL     1      -2.621  -0.953   0.251  1.00  0.00           H  
HETATM   24  H9  UNL     1      -4.553   0.748   0.684  1.00  0.00           H  
HETATM   25  H10 UNL     1      -3.847   2.331   0.160  1.00  0.00           H  
HETATM   26  H11 UNL     1      -4.193   1.995   1.892  1.00  0.00           H  
HETATM   27  H12 UNL     1      -1.486   2.651   2.060  1.00  0.00           H  
HETATM   28  H13 UNL     1      -1.672  -2.454  -2.238  1.00  0.00           H  
CONECT    1    2   16   17   18
CONECT    2    3    3    4
CONECT    4    5   19
CONECT    5    6   13   20
CONECT    6    7   21   22
CONECT    7    8    8   12
CONECT    8    9   23
CONECT    9   10   11
CONECT   10   24   25   26
CONECT   11   12   12   27
CONECT   13   14   14   15
CONECT   15   28
END

Synonyms

Value	Source
N-Acetyl-1-methylhistidine	ChEBI

Molecular Formula

C₉H₁₃N₃O₃

Average Mass

211.221

Monoisotopic Mass

211.095691291

IUPAC Name

(2S)-2-acetamido-3-(1-methyl-1H-imidazol-4-yl)propanoic acid

Traditional Name

(2S)-2-acetamido-3-(1-methylimidazol-4-yl)propanoic acid

CAS Registry Number

Not Available

SMILES

CN1C=NC(C[C@H](NC(C)=O)C(O)=O)=C1

InChI Identifier

InChI=1S/C9H13N3O3/c1-6(13)11-8(9(14)15)3-7-4-12(2)5-10-7/h4-5,8H,3H2,1-2H3,(H,11,13)(H,14,15)/t8-/m0/s1

InChI Key

GVRCKHXHWSYDEF-QMMMGPOBSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Histidine and derivatives

Alternative Parents

Substituents

Histidine or derivatives
N-acyl-alpha-amino acid
N-acyl-alpha amino acid or derivatives
N-acyl-l-alpha-amino acid
Imidazolyl carboxylic acid derivative
N-substituted imidazole
Azole
Imidazole
Acetamide
Heteroaromatic compound
Secondary carboxylic acid amide
Carboxamide group
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid
Azacycle
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Organic oxygen compound
Organic nitrogen compound
Organic oxide
Carbonyl group
Organopnictogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	3.6 g/L	ALOGPS
logP	-0.55	ALOGPS
logP	-2.2	ChemAxon
logS	-1.8	ALOGPS
pKa (Strongest Acidic)	3.62	ChemAxon
pKa (Strongest Basic)	6.4	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	84.22 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	51.83 m³·mol⁻¹	ChemAxon
Polarizability	21.17 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood
Feces

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Firmicutes	2	Human ; Human feces	Indirect association between microbiota composition and metabolites measured in host biospecimen

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified						Adult (>18 years old)	Both	Normal	HMDB	29808030
Human Blood	Detected but not Quantified						Adult (40 years old)	Both	Normal	HMDB	26317986

External Links

HMDB ID

HMDB0240340

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

57560763

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53859791

PDB ID

Not Available

ChEBI ID

133181

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Yu B, Zheng Y, Alexander D, Morrison AC, Coresh J, Boerwinkle E: Genetic determinants influencing human serum metabolome among African Americans. PLoS Genet. 2014 Mar 13;10(3):e1004212. doi: 10.1371/journal.pgen.1004212. eCollection 2014 Mar. [PubMed:24625756 ]

Showing metabocard for N-Acetyl-1-methylhistidine (MMDBc0000743)

MOL for #<Metabolite:0x00007f92087d3fb0>

3D MOL for #<Metabolite:0x00007f92087d3fb0>

3D SDF for #<Metabolite:0x00007f92087d3fb0>

3D-SDF for #<Metabolite:0x00007f92087d3fb0>

PDB for #<Metabolite:0x00007f92087d3fb0>

3D PDB for #<Metabolite:0x00007f92087d3fb0>

SMILES for #<Metabolite:0x00007f92087d3fb0>

INCHI for #<Metabolite:0x00007f92087d3fb0>

Structure for #<Metabolite:0x00007f92087d3fb0>

3D Structure for #<Metabolite:0x00007f92087d3fb0>