| MMDBm0000002 | Micromonospora aurantiaca ATCC 27029 | Eubacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000009 | Adlercreutzia equolifaciens DSM 19450 | Eubacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000014 | Akkermansia muciniphila | Eubacteria | Verrucomicrobia | Human Feces | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0000028 | Bacillus halodurans C-125 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000033 | Bacillus vallismortis DV1-F-3 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000057 | Bacteroides vulgatus ATCC 8482 | Eubacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0000097 | Brevibacillus brevis NBRC 100599 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000132 | Clostridium perfringens ATCC 13124 | Eubacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000148 | Dysgonomonas gadei ATCC BAA-286 | Eubacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000150 | Eggerthella lenta DSM 2243 | Eubacteria | Actinobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000151 | Eggerthella sp. YY7918 | Eubacteria | Actinobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000217 | Methanobrevibacter smithii | Archaea | Euryarchaeota | Human Feces | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0000222 | Ochrobactrum intermedium LMG 3301 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000241 | Porphyromonas asaccharolytica DSM 20707 | Eubacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0000242 | Porphyromonas endodontalis ATCC 35406 | Eubacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000409 | Capnocytophaga ochracea | Eubacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0000767 | Bacillus pseudofirmus | Eubacteria | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0000882 | Cetobacterium somerae | Eubacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000948 | Roseburia inulinivorans | Eubacteria | Firmicutes | Human Stool | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001098 | Methanobrevibacter | Archaea | Euryarchaeota | Human Feces | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001100 | Veillonella | Eubacteria | Firmicutes | Human | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001101 | Rothia | Eubacteria | Actinobacteria | Human | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001118 | Olsenella | Eubacteria | Actinobacteria | Human | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
