| MMDBm0000007 | Acinetobacter pittii ANC 4052 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000016 | Alcaligenes faecalis subsp. faecalis NBRC 13111 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000061 | Bifidobacterium Bifidum | Eubacteria | Actinobacteria | Human Feces | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0001166 | Achromobacter xylosoxidans A8 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001480 | Comamonas testosteroni CNB-2 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001529 | Delftia acidovorans SPH-1 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001671 | Halobacterium sp. NRC-1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001672 | Halobacterium salinarum R1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002086 | Pseudomonas stutzeri DSM 4166 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002164 | Acinetobacter calcoaceticus PHEA-2 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002397 | Pseudomonas fluorescens Pf0-1 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002403 | Pseudomonas putida F1 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002663 | Synechococcus elongatus PCC 7942 | Eubacteria | Cyanobacteria | Not Available | Not Available | RHEA |
| MMDBm0014526 | Leptosphaeria maculans JN3 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0015195 | Parastagonospora nodorum SN15 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0019059 | Pyrenophora tritici-repentis Pt-1C-BFP | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0028954 | Aspergillus niger CBS 513.88 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0028980 | Aspergillus oryzae RIB40 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0036372 | Nannizzia gypsea CBS 118893 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0036453 | Trichophyton verrucosum HKI 0517 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0055039 | Colletotrichum graminicola M1.001 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0063397 | Fusarium fujikuroi | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0081377 | Podospora anserina S mat+ | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0082117 | Neurospora crassa OR74A | Fungi | Ascomycota | Not Available | Not Available | RHEA |
