| MMDBm0000012 | Agrobacterium tumefaciens F2 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000014 | Akkermansia muciniphila | Eubacteria | Verrucomicrobia | Human Feces | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0000095 | Bradyrhizobium elkanii USDA 76 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000221 | Ochrobactrum anthropi ATCC 49188 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000228 | Paenibacillus daejeonensis DSM 15491 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000948 | Roseburia inulinivorans | Eubacteria | Firmicutes | Human Stool | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001083 | Roseburia intestinalis | Eubacteria | Firmicutes | Human Stool | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001113 | Holdemania | Eubacteria | Firmicutes | Human Stool | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001125 | Subdoligranulum | Eubacteria | Firmicutes | Human Feces | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001126 | Flavonifractor plautii | Eubacteria | Firmicutes | Not Available | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001131 | Oscillibacter | Eubacteria | Firmicutes | Human Feces | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001480 | Comamonas testosteroni CNB-2 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001490 | Corynebacterium kroppenstedtii DSM 44385 | Eubacteria | Actinobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001529 | Delftia acidovorans SPH-1 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001858 | Methylobacterium radiotolerans JCM 2831 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0417451 | Brevundimonas diminuta 470-4 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0422692 | Afipia birgiae 34632 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0423522 | Bradyrhizobium japonicum USDA 6 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0435884 | Methylobacterium mesophilicum SR1.6/6 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0453897 | Paracoccus yeei ATCC BAA-599 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0461764 | Roseomonas mucosa ATCC BAA-692 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0639412 | Schlesneria paludicola DSM 18645 | Eubacteria | Planctomycetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0658861 | Rhodococcus rhodochrous ATCC 21198 | Eubacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0665710 | Dermacoccus nishinomiyaensis | Eubacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0766462 | Brochothrix thermosphacta DSM 20171 = FSL F6-1036 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
