| MMDBm0000028 | Bacillus halodurans C-125 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000046 | Bacteroides fragilis NCTC 9343 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000047 | Bacteroides fragilis YCH46 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000055 | Bacteroides thetaiotaomicron VPI-5482 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000057 | Bacteroides vulgatus ATCC 8482 | Eubacteria | Bacteroidetes | Human | Not Available | RHEA |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000160 | Escherichia coli | Eubacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0000162 | Escherichia coli CFT073 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000167 | Escherichia coli SMS-3-5 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000171 | Eubacterium eligens ATCC 27750 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000198 | Lachnoclostridium phytofermentans ISDg | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000368 | Shigella flexneri | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001192 | Actinobacillus succinogenes 130Z | Eubacteria | Proteobacteria | Cattle | Not Available | RHEA |
| MMDBm0001248 | Bacillus subtilis subsp. subtilis str. 168 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0001255 | Bacillus licheniformis ATCC 14580 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001257 | Bacillus clausii KSM-K16 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0001259 | Bacillus amyloliquefaciens FZB42 | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0001260 | Bacillus pumilus SAFR-032 | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0001284 | Mannheimia succiniciproducens MBEL55E | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001305 | Brachyspira hyodysenteriae WA1 | Eubacteria | Spirochaetes | Pig | Not Available | RHEA |
| MMDBm0001312 | Brucella melitensis bv. 1 str. 16M | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001313 | Brucella suis 1330 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001317 | Brucella canis ATCC 23365 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001318 | Brucella suis ATCC 23445 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001358 | Thermoanaerobacter tengcongensis MB4 | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
