| MMDBm0000031 | Bacillus subtilis | Eubacteria | Firmicutes | Human | Not Available | VMH |
| MMDBm0000036 | Bacteroides caccae | Eubacteria | Bacteroidetes | Human Feces | Not Available | VMH |
| MMDBm0000043 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | Not Available |
| MMDBm0000049 | Bacteroides ovatus | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | Not Available |
| MMDBm0000052 | Bacteroides stercoris | Eubacteria | Bacteroidetes | Human Feces | Not Available | VMH |
| MMDBm0000053 | Bacteroides stercoris ATCC 43183 | Eubacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000054 | Bacteroides thetaiotaomicron | Eubacteria | Bacteroidetes | Human Feces | Not Available | VMH |
| MMDBm0000055 | Bacteroides thetaiotaomicron VPI-5482 | Eubacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0000056 | Bacteroides vulgatus | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | Not Available |
| MMDBm0000061 | Bifidobacterium Bifidum | Eubacteria | Actinobacteria | Human Feces | Microbial culture | Not Available |
| MMDBm0000098 | Butyrivibrio fibrisolvens | Eubacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000116 | Clostridium beijerinckii NCIMB 8052 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000141 | Collinsella aerofaciens | Eubacteria | Actinobacteria | Human Feces | Microbial culture | Not Available |
| MMDBm0000172 | Eubacterium limosum KIST612 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000173 | Eubacterium rectale ATCC 33656 | Eubacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000179 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Human Feces | Not Available | VMH |
| MMDBm0000180 | Faecalibacterium prausnitzii L2-6 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000181 | Faecalibacterium prausnitzii SL3/3 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000249 | Prevotella ruminicola 23 | Eubacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0000310 | Treponema bryantii | Eubacteria | Spirochaetes | Not Available | Microbial culture | Not Available |
| MMDBm0000349 | Acetobacter pasteurianus | Eubacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000421 | Ruminococcus flavefaciens | Eubacteria | Firmicutes | Human Feces | Microbial culture | Not Available |
| MMDBm0000462 | Bacillus licheniformis | Eubacteria | Firmicutes | Not Available | Not Available | VMH |
| MMDBm0000472 | Clostridium butyricum | Eubacteria | Firmicutes | Human Feces | Not Available | VMH |
| MMDBm0000482 | Ruminiclostridium cellulolyticum | Eubacteria | Firmicutes | Not Available | Microbial culture | Not Available |
