| MMDBm0000016 | Alcaligenes faecalis subsp. faecalis NBRC 13111 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000031 | Bacillus subtilis | Eubacteria | Firmicutes | Human | Microbial culture | Not Available |
| MMDBm0000093 | Blautia obeum A2-162 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000094 | Blautia obeum ATCC 29174 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000095 | Bradyrhizobium elkanii USDA 76 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000100 | Campylobacter fetus subsp. fetus 82-40 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000116 | Clostridium beijerinckii NCIMB 8052 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000125 | Clostridium clostridioforme CM201 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000143 | Coprococcus catus GD/7 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000148 | Dysgonomonas gadei ATCC BAA-286 | Eubacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000188 | Geobacter metallireducens | Eubacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000219 | Methylobacterium nodulans | Eubacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000221 | Ochrobactrum anthropi ATCC 49188 | Eubacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000245 | Prevotella denticola F0289 | Eubacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0000252 | Pseudomonas aeruginosa | Eubacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0000262 | Ruminococcus bicirculans | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000265 | Ruminococcus sp. SR1/5 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000266 | Ruminococcus torques L2-14 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000327 | Paracoccus denitrificans | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0000332 | Pseudomonas fluorescens | Eubacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0000333 | Pseudomonas mendocina | Eubacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000334 | Pseudomonas putida | Eubacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0000335 | Pseudomonas stutzeri | Eubacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0000336 | Pseudomonas syringae | Eubacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
