| MMDBm0000016 | Alcaligenes faecalis subsp. faecalis NBRC 13111 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000061 | Bifidobacterium Bifidum | Eubacteria | Actinobacteria | Human Feces | Microbial culture | Not Available |
| MMDBm0000062 | Bifidobacterium adolescentis | Eubacteria | Actinobacteria | Human Feces | Microbial culture | Not Available |
| MMDBm0000108 | Clostridioides difficile | Eubacteria | Firmicutes | Human Feces | Microbial culture | Not Available |
| MMDBm0000131 | Clostridium perfringens | Eubacteria | Firmicutes | Human | Microbial culture | Not Available |
| MMDBm0000179 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Human Feces | Microbial culture | Not Available |
| MMDBm0000327 | Paracoccus denitrificans | Eubacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000334 | Pseudomonas putida | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000337 | Ralstonia pickettii | Eubacteria | Proteobacteria | Human Feces | Microbial culture | Not Available |
| MMDBm0000346 | Methylorubrum extorquens | Eubacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0000462 | Bacillus licheniformis | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0000554 | Methanohalophilus mahii | Archaea | Euryarchaeota | Not Available | Microbial culture | Not Available |
| MMDBm0000562 | Methanosarcina barkeri | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0000867 | Thermodesulfatator indicus | Eubacteria | Thermodesulfobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0001066 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0001166 | Achromobacter xylosoxidans A8 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001183 | Acinetobacter sp. ADP1 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001248 | Bacillus subtilis subsp. subtilis str. 168 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0001636 | Geobacillus kaustophilus HTA426 | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0001843 | Methanosarcina acetivorans C2A | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001844 | Methanosarcina mazei Go1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001845 | Methanosarcina barkeri str. Fusaro | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001855 | Methylobacillus flagellatus KT | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001862 | Methylobacterium extorquens AM1 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002190 | Vibrio furnissii NCTC 11218 | Eubacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
